miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10463 3' -50.9 NC_002687.1 + 212419 0.66 0.999758
Target:  5'- gGGCGaccagCGgaCGCAGGAcuuugaGGUGGCCGc -3'
miRNA:   3'- -UCGCaa---GCgaGCGUUCU------UUACUGGCa -5'
10463 3' -50.9 NC_002687.1 + 32696 0.66 0.999696
Target:  5'- uGUGguuUCGUUCGgGAGGGAUGAcaCCGa -3'
miRNA:   3'- uCGCa--AGCGAGCgUUCUUUACU--GGCa -5'
10463 3' -50.9 NC_002687.1 + 187998 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUc -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 188237 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 188474 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 188710 0.66 0.999689
Target:  5'- uGCGUUUuaccagaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 188946 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 189183 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 189420 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUc -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 189658 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUc -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 187762 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUc -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 187525 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 185427 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 185868 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 186104 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 186341 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 186577 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 186815 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUc -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 187051 0.66 0.999689
Target:  5'- uGCGUUUuuccacaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5'
10463 3' -50.9 NC_002687.1 + 187288 0.66 0.999689
Target:  5'- uGCGUUUuaccagaGCUCGUgcGGAcgGACUGUu -3'
miRNA:   3'- uCGCAAG-------CGAGCGuuCUUuaCUGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.