miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10463 5' -54.3 NC_002687.1 + 9503 0.66 0.996416
Target:  5'- gGGACauuGACcgGAGauUCgGCUgACGGCGUUGCg -3'
miRNA:   3'- -UCUG---CUG--CUC--AG-CGAaUGCCGCAGCG- -5'
10463 5' -54.3 NC_002687.1 + 258255 0.66 0.996416
Target:  5'- --cCGugGAGauUCGCgucacggacaGCGGCGUCGg -3'
miRNA:   3'- ucuGCugCUC--AGCGaa--------UGCCGCAGCg -5'
10463 5' -54.3 NC_002687.1 + 224841 0.66 0.995851
Target:  5'- uGACGAUcggaGAGcCGCcgacGCGGCGgCGCc -3'
miRNA:   3'- uCUGCUG----CUCaGCGaa--UGCCGCaGCG- -5'
10463 5' -54.3 NC_002687.1 + 312753 0.66 0.995851
Target:  5'- -aACG-CGAGUCGa-UAUGGCcgccGUCGCg -3'
miRNA:   3'- ucUGCuGCUCAGCgaAUGCCG----CAGCG- -5'
10463 5' -54.3 NC_002687.1 + 295323 0.66 0.995851
Target:  5'- -cGCGuGCGAGUcCGCcUACaggcaGGCGUUGCu -3'
miRNA:   3'- ucUGC-UGCUCA-GCGaAUG-----CCGCAGCG- -5'
10463 5' -54.3 NC_002687.1 + 35175 0.66 0.995851
Target:  5'- uAGACgGGCGAGgCGUUgacauaucuCGGCGUCa- -3'
miRNA:   3'- -UCUG-CUGCUCaGCGAau-------GCCGCAGcg -5'
10463 5' -54.3 NC_002687.1 + 316196 0.66 0.995851
Target:  5'- -uGCGGCGGGaucuUCGggUGCGGCGgcgGCa -3'
miRNA:   3'- ucUGCUGCUC----AGCgaAUGCCGCag-CG- -5'
10463 5' -54.3 NC_002687.1 + 58105 0.66 0.995215
Target:  5'- gGGaACGACcaGAGUCGaggGCGGCcgagCGCg -3'
miRNA:   3'- -UC-UGCUG--CUCAGCgaaUGCCGca--GCG- -5'
10463 5' -54.3 NC_002687.1 + 118203 0.66 0.995078
Target:  5'- aGGACGACGGugcagcgccugcGUCGaacgaggacgACGGUGcCGCg -3'
miRNA:   3'- -UCUGCUGCU------------CAGCgaa-------UGCCGCaGCG- -5'
10463 5' -54.3 NC_002687.1 + 309488 0.67 0.992817
Target:  5'- uGGugGACGGGgaGCUggugACGGuCGaCGCc -3'
miRNA:   3'- -UCugCUGCUCagCGAa---UGCC-GCaGCG- -5'
10463 5' -54.3 NC_002687.1 + 321885 0.67 0.992817
Target:  5'- cGGCGACuguuugCGaCUUGCGGCaUCGCu -3'
miRNA:   3'- uCUGCUGcuca--GC-GAAUGCCGcAGCG- -5'
10463 5' -54.3 NC_002687.1 + 102232 0.67 0.992817
Target:  5'- aGGACGACGG--UGCUUGgGGUGgaaGCc -3'
miRNA:   3'- -UCUGCUGCUcaGCGAAUgCCGCag-CG- -5'
10463 5' -54.3 NC_002687.1 + 41763 0.67 0.992723
Target:  5'- uGGACGGCGuGcggcacaccaacaUCgacacgGCUUGCGGC-UCGCg -3'
miRNA:   3'- -UCUGCUGCuC-------------AG------CGAAUGCCGcAGCG- -5'
10463 5' -54.3 NC_002687.1 + 298037 0.67 0.992239
Target:  5'- cGAUG-CGGaUCGCUcgcugaaucagauCGGCGUCGCg -3'
miRNA:   3'- uCUGCuGCUcAGCGAau-----------GCCGCAGCG- -5'
10463 5' -54.3 NC_002687.1 + 103522 0.67 0.991729
Target:  5'- cGGGCGACGGGaUGUgUGCGGgGgagaugcuugucaUCGCg -3'
miRNA:   3'- -UCUGCUGCUCaGCGaAUGCCgC-------------AGCG- -5'
10463 5' -54.3 NC_002687.1 + 107240 0.67 0.991411
Target:  5'- -cGCGcuguuucGCGAGUCGUuuccaaagucgucaUUGCGGCGgccuUCGCg -3'
miRNA:   3'- ucUGC-------UGCUCAGCG--------------AAUGCCGC----AGCG- -5'
10463 5' -54.3 NC_002687.1 + 132758 0.67 0.990745
Target:  5'- cGGCGACGAacacgaGCUucUGCGGCGUUa- -3'
miRNA:   3'- uCUGCUGCUcag---CGA--AUGCCGCAGcg -5'
10463 5' -54.3 NC_002687.1 + 44663 0.67 0.989547
Target:  5'- aGGACGACGAGaUGUUUGCGcuucacuauGCG-CGUu -3'
miRNA:   3'- -UCUGCUGCUCaGCGAAUGC---------CGCaGCG- -5'
10463 5' -54.3 NC_002687.1 + 205744 0.67 0.989547
Target:  5'- gGGACGaguccacaaacaGCGAGUUGUUgucgauauUGGCGUaCGCg -3'
miRNA:   3'- -UCUGC------------UGCUCAGCGAau------GCCGCA-GCG- -5'
10463 5' -54.3 NC_002687.1 + 332245 0.67 0.988771
Target:  5'- uGGGCGugGAGgCGaUUGCGGCaucaugaccaccgccGUCGUu -3'
miRNA:   3'- -UCUGCugCUCaGCgAAUGCCG---------------CAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.