Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10467 | 3' | -45 | NC_002687.1 | + | 325523 | 0.66 | 1 |
Target: 5'- cGUUUGUcgGUgGGUACGGcGGuACAGg -3' miRNA: 3'- -UAAACAaaCAgCCAUGCCaCU-UGUUu -5' |
|||||||
10467 | 3' | -45 | NC_002687.1 | + | 10459 | 0.67 | 1 |
Target: 5'- ---gGUgccgUGUCGGaUGCGG-GGACGGAg -3' miRNA: 3'- uaaaCAa---ACAGCC-AUGCCaCUUGUUU- -5' |
|||||||
10467 | 3' | -45 | NC_002687.1 | + | 226827 | 0.66 | 1 |
Target: 5'- --gUGgcggUGgCGGaGCGGUGAACGAu -3' miRNA: 3'- uaaACaa--ACaGCCaUGCCACUUGUUu -5' |
|||||||
10467 | 3' | -45 | NC_002687.1 | + | 129974 | 0.68 | 0.999999 |
Target: 5'- -cUUGUUguaGUCGGUGCaauuGGUGGGCu-- -3' miRNA: 3'- uaAACAAa--CAGCCAUG----CCACUUGuuu -5' |
|||||||
10467 | 3' | -45 | NC_002687.1 | + | 305167 | 0.68 | 0.999998 |
Target: 5'- -gUUGUggcGUCGGUugGGcGGACGu- -3' miRNA: 3'- uaAACAaa-CAGCCAugCCaCUUGUuu -5' |
|||||||
10467 | 3' | -45 | NC_002687.1 | + | 63160 | 0.72 | 0.999545 |
Target: 5'- cGUUUGUUUGUCGGgcAUGGUaaGAGCGu- -3' miRNA: 3'- -UAAACAAACAGCCa-UGCCA--CUUGUuu -5' |
|||||||
10467 | 3' | -45 | NC_002687.1 | + | 62763 | 1.05 | 0.101072 |
Target: 5'- uAUUUGUUUGUCGGUACGGUGAACAAAg -3' miRNA: 3'- -UAAACAAACAGCCAUGCCACUUGUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home