miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10467 5' -49.6 NC_002687.1 + 286431 0.66 0.999882
Target:  5'- aGCUCcacgUGauuugauugcugcCCAUGCCuUGACAAGCAAg -3'
miRNA:   3'- gCGAGaa--AU-------------GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 156440 0.66 0.999852
Target:  5'- aCGCUCaccacGCCAUGUgCGACGucGACGc -3'
miRNA:   3'- -GCGAGaaa--UGGUACGgGCUGU--UUGUu -5'
10467 5' -49.6 NC_002687.1 + 91979 0.66 0.999811
Target:  5'- uGCUUggagACCGUGgUCGGCGAGCu- -3'
miRNA:   3'- gCGAGaaa-UGGUACgGGCUGUUUGuu -5'
10467 5' -49.6 NC_002687.1 + 252618 0.67 0.999699
Target:  5'- gCGCUCUg---UAUGUuuGACAAACAc -3'
miRNA:   3'- -GCGAGAaaugGUACGggCUGUUUGUu -5'
10467 5' -49.6 NC_002687.1 + 162931 0.67 0.999699
Target:  5'- uGCUCUUcaaggaCAUGCCCGAUGccaucGACAu -3'
miRNA:   3'- gCGAGAAaug---GUACGGGCUGU-----UUGUu -5'
10467 5' -49.6 NC_002687.1 + 274762 0.67 0.999531
Target:  5'- aCGUgUCUUccCCGUGCCC-ACAAACAGc -3'
miRNA:   3'- -GCG-AGAAauGGUACGGGcUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 63128 0.67 0.999531
Target:  5'- aCGCUUUguucACCGUa-CCGACAAACAAa -3'
miRNA:   3'- -GCGAGAaa--UGGUAcgGGCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 287076 0.67 0.999302
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAc -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 287334 0.67 0.999302
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAc -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 287847 0.67 0.999302
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAc -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 290079 0.67 0.999302
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAc -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 290336 0.67 0.999302
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAc -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 113982 0.67 0.999287
Target:  5'- aCGC-CUUggACgCGUGCCCGGgccCAGGCAAg -3'
miRNA:   3'- -GCGaGAAa-UG-GUACGGGCU---GUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 180240 0.67 0.999287
Target:  5'- uGUUCUUUGCCGUuGCCUGcugAAACAGu -3'
miRNA:   3'- gCGAGAAAUGGUA-CGGGCug-UUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 287205 0.68 0.998744
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAg -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 287463 0.68 0.998744
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAg -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 288798 0.68 0.998744
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAg -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 289438 0.68 0.998744
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAg -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 289822 0.68 0.998744
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAg -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5'
10467 5' -49.6 NC_002687.1 + 286688 0.68 0.998744
Target:  5'- aGCUCcacgugauuugauugUUGcCCAUGCCuUGACAAGCGAg -3'
miRNA:   3'- gCGAGa--------------AAU-GGUACGG-GCUGUUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.