miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10468 5' -55 NC_002687.1 + 200716 0.68 0.970015
Target:  5'- uGGCgUUGACgUCUGcgaaggCUGCCGCcAGCa -3'
miRNA:   3'- -CCG-AGCUGgGGACaa----GACGGUGuUCG- -5'
10468 5' -55 NC_002687.1 + 8813 0.68 0.964045
Target:  5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3'
miRNA:   3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5'
10468 5' -55 NC_002687.1 + 9074 0.68 0.964045
Target:  5'- cGGCUUGGCaCCCUGUUUU----CAAGCa -3'
miRNA:   3'- -CCGAGCUG-GGGACAAGAcgguGUUCG- -5'
10468 5' -55 NC_002687.1 + 210313 0.68 0.964045
Target:  5'- gGGCgcCGACCUCUgcGUUCUGgCGCucGCc -3'
miRNA:   3'- -CCGa-GCUGGGGA--CAAGACgGUGuuCG- -5'
10468 5' -55 NC_002687.1 + 87752 0.69 0.953607
Target:  5'- -aCUCGGCCUCUGguagacgggCUGCU-CAAGCg -3'
miRNA:   3'- ccGAGCUGGGGACaa-------GACGGuGUUCG- -5'
10468 5' -55 NC_002687.1 + 48309 0.69 0.953607
Target:  5'- uGGCUCGAUCUuucuUUGUUCUGCUAUu--- -3'
miRNA:   3'- -CCGAGCUGGG----GACAAGACGGUGuucg -5'
10468 5' -55 NC_002687.1 + 299665 0.69 0.949715
Target:  5'- cGGCggCGACaCCCUGaUUUGUUGCcAGCa -3'
miRNA:   3'- -CCGa-GCUG-GGGACaAGACGGUGuUCG- -5'
10468 5' -55 NC_002687.1 + 200840 0.69 0.945613
Target:  5'- aGGCUCGGCaUCUGcuucugUCUGCCccGCAGGa -3'
miRNA:   3'- -CCGAGCUGgGGACa-----AGACGG--UGUUCg -5'
10468 5' -55 NC_002687.1 + 219608 0.69 0.941296
Target:  5'- aGUUUGACCCUUGcUUCUG--GCAGGCa -3'
miRNA:   3'- cCGAGCUGGGGAC-AAGACggUGUUCG- -5'
10468 5' -55 NC_002687.1 + 85901 0.69 0.939959
Target:  5'- -cCUCGGCUCCUGgagggccacguggucCUGCCGCGccGGCg -3'
miRNA:   3'- ccGAGCUGGGGACaa-------------GACGGUGU--UCG- -5'
10468 5' -55 NC_002687.1 + 263190 0.69 0.936764
Target:  5'- cGGCUUGugUCCagGUUUUGCCuuCGAGa -3'
miRNA:   3'- -CCGAGCugGGGa-CAAGACGGu-GUUCg -5'
10468 5' -55 NC_002687.1 + 89260 0.7 0.932014
Target:  5'- aGCUaggGGCUCCUGcUCUGC-ACGAGCu -3'
miRNA:   3'- cCGAg--CUGGGGACaAGACGgUGUUCG- -5'
10468 5' -55 NC_002687.1 + 121471 0.7 0.927047
Target:  5'- aGGCUuggugaccCGugCCCggauuccgaggGUUCcGCCACGGGCc -3'
miRNA:   3'- -CCGA--------GCugGGGa----------CAAGaCGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 141016 0.7 0.910836
Target:  5'- cGGCUCGAgUCgUUGUcgucaaaggccUCUGCCACAaugauaGGCa -3'
miRNA:   3'- -CCGAGCUgGG-GACA-----------AGACGGUGU------UCG- -5'
10468 5' -55 NC_002687.1 + 283542 0.7 0.904999
Target:  5'- uGCUgCcGCCCCUGUUgCUGCCGCuucggauGCu -3'
miRNA:   3'- cCGA-GcUGGGGACAA-GACGGUGuu-----CG- -5'
10468 5' -55 NC_002687.1 + 55216 0.71 0.892686
Target:  5'- aGGCcaUCGACUaCUGUUCgucgGCCGCcauGGCa -3'
miRNA:   3'- -CCG--AGCUGGgGACAAGa---CGGUGu--UCG- -5'
10468 5' -55 NC_002687.1 + 269549 0.71 0.892686
Target:  5'- uGUUCGACCCgUGU--UGCCGUAGGCc -3'
miRNA:   3'- cCGAGCUGGGgACAagACGGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 235767 0.71 0.886216
Target:  5'- cGGCaUCGACCuCCUGgaUUUGuUCGCGGGCu -3'
miRNA:   3'- -CCG-AGCUGG-GGACa-AGAC-GGUGUUCG- -5'
10468 5' -55 NC_002687.1 + 301755 0.71 0.87954
Target:  5'- uGCUCGACCCCUGUgacccagcaucgUCggagaaaaUGCaCGCAAuGCu -3'
miRNA:   3'- cCGAGCUGGGGACA------------AG--------ACG-GUGUU-CG- -5'
10468 5' -55 NC_002687.1 + 170724 0.71 0.87954
Target:  5'- cGGUUCGugCCCcgGUUCguggGCCGgguGGCa -3'
miRNA:   3'- -CCGAGCugGGGa-CAAGa---CGGUgu-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.