Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10469 | 3' | -51.6 | NC_002687.1 | + | 121771 | 0.67 | 0.997666 |
Target: 5'- gUGAUCuGGaggugaaGACUUUGcaaagCGCCGCCCUc -3' miRNA: 3'- -ACUAG-UCg------CUGAAAUa----GCGGUGGGAc -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 211903 | 0.68 | 0.996234 |
Target: 5'- cGGUCAGCGAguuccaCUcauuuucagaaUUGcCGCCACCCg- -3' miRNA: 3'- aCUAGUCGCU------GA-----------AAUaGCGGUGGGac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 153991 | 0.69 | 0.987234 |
Target: 5'- cGGUCAGCGAaguu-UCGCCcaauCCCUc -3' miRNA: 3'- aCUAGUCGCUgaaauAGCGGu---GGGAc -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 158709 | 0.7 | 0.983888 |
Target: 5'- aGAUCuGUGAU---GUCGCCACCUa- -3' miRNA: 3'- aCUAGuCGCUGaaaUAGCGGUGGGac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 171617 | 0.72 | 0.939923 |
Target: 5'- aUGGUCAGgGAUUacUUGaacCGCCACCCUa -3' miRNA: 3'- -ACUAGUCgCUGA--AAUa--GCGGUGGGAc -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 200703 | 0.76 | 0.828699 |
Target: 5'- cGAauUCuGCGACUUUGUCGUCGCCaugCUGg -3' miRNA: 3'- aCU--AGuCGCUGAAAUAGCGGUGG---GAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 65341 | 1.1 | 0.014432 |
Target: 5'- gUGAUCAGCGACUUUAUCGCCACCCUGa -3' miRNA: 3'- -ACUAGUCGCUGAAAUAGCGGUGGGAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 248942 | 0.67 | 0.996775 |
Target: 5'- gGGUCAGUGAUggUAUCGUacCCCUc -3' miRNA: 3'- aCUAGUCGCUGaaAUAGCGguGGGAc -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 255779 | 0.67 | 0.998342 |
Target: 5'- aGAUgAGCGAaaacAUCGCgGCCgCUGg -3' miRNA: 3'- aCUAgUCGCUgaaaUAGCGgUGG-GAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 332512 | 0.66 | 0.99921 |
Target: 5'- gUGAUCcacccuuuGCGGCUgca--GCaCACCCUGg -3' miRNA: 3'- -ACUAGu-------CGCUGAaauagCG-GUGGGAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 332027 | 0.66 | 0.999042 |
Target: 5'- aGGUCuuGCaGGCUggccaugCGCCGCCUUGa -3' miRNA: 3'- aCUAGu-CG-CUGAaaua---GCGGUGGGAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 160312 | 0.67 | 0.996775 |
Target: 5'- uUGG-CGGCGGCUgccuUgGCCGCCCc- -3' miRNA: 3'- -ACUaGUCGCUGAaau-AgCGGUGGGac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 159811 | 0.66 | 0.999042 |
Target: 5'- cGGUCAGUGACguaacUAUCGCgGUCCa- -3' miRNA: 3'- aCUAGUCGCUGaa---AUAGCGgUGGGac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 291385 | 0.66 | 0.998844 |
Target: 5'- cGAggCAGCuGCUuuuguguuuuuUUAUUGCCGCCCg- -3' miRNA: 3'- aCUa-GUCGcUGA-----------AAUAGCGGUGGGac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 24977 | 0.66 | 0.998612 |
Target: 5'- -aAUCAGUGGCUgcgggcccuUCGCCACaCCa- -3' miRNA: 3'- acUAGUCGCUGAaau------AGCGGUG-GGac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 261581 | 0.67 | 0.998342 |
Target: 5'- gGGUCAgcaauccucGCGACUUUGcaaCGCCGCCa-- -3' miRNA: 3'- aCUAGU---------CGCUGAAAUa--GCGGUGGgac -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 277196 | 0.79 | 0.659385 |
Target: 5'- uUGGUCuuGGCGACUUcGUCGUCGCUCUGu -3' miRNA: 3'- -ACUAG--UCGCUGAAaUAGCGGUGGGAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 215360 | 0.73 | 0.924983 |
Target: 5'- -cGUCAucGUGACgaUGUCGCCGCCCUc -3' miRNA: 3'- acUAGU--CGCUGaaAUAGCGGUGGGAc -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 39371 | 0.73 | 0.935175 |
Target: 5'- aGcAUCAGCG-CUguuuuucCGCCGCCCUGg -3' miRNA: 3'- aC-UAGUCGCuGAaaua---GCGGUGGGAC- -5' |
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10469 | 3' | -51.6 | NC_002687.1 | + | 256636 | 0.68 | 0.994147 |
Target: 5'- -aGUCGGCGGCgcUAUCGCU-CCCg- -3' miRNA: 3'- acUAGUCGCUGaaAUAGCGGuGGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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