Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10469 | 5' | -49.9 | NC_002687.1 | + | 225657 | 0.68 | 0.998087 |
Target: 5'- gGACAGGggGGUGGcguGGG-CGGCCg -3' miRNA: 3'- -CUGUCCuaCCGCCuuuUCUaGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 243503 | 0.82 | 0.621372 |
Target: 5'- cAUGGGGUGGCGGAc-GGAUCGACCa -3' miRNA: 3'- cUGUCCUACCGCCUuuUCUAGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 299256 | 0.73 | 0.962154 |
Target: 5'- aGACAGGAUcaaggacguccagcGGCGGGcgacGAGGGUCGACa- -3' miRNA: 3'- -CUGUCCUA--------------CCGCCU----UUUCUAGUUGga -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 175837 | 0.71 | 0.985602 |
Target: 5'- -cCGGGGUGGCauGGGAAcGAUCAugCUc -3' miRNA: 3'- cuGUCCUACCG--CCUUUuCUAGUugGA- -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 291060 | 0.71 | 0.987225 |
Target: 5'- gGAgAGaGAaGGCGGggGAGggCAACCc -3' miRNA: 3'- -CUgUC-CUaCCGCCuuUUCuaGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 3702 | 0.71 | 0.988703 |
Target: 5'- cGACuGGuUGGUGGAGAGGucagcggCAGCCUu -3' miRNA: 3'- -CUGuCCuACCGCCUUUUCua-----GUUGGA- -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 297523 | 0.7 | 0.991258 |
Target: 5'- cGACcGGAgaaagGGCGGGAcAGGUCGGCa- -3' miRNA: 3'- -CUGuCCUa----CCGCCUUuUCUAGUUGga -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 226401 | 0.7 | 0.994212 |
Target: 5'- gGACAGGggGGUGGuguGGG-CGGCCg -3' miRNA: 3'- -CUGUCCuaCCGCCuuuUCUaGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 281947 | 0.69 | 0.996843 |
Target: 5'- cGGCAGGAgcaggGGCGGugccGGGGggCAAUCg -3' miRNA: 3'- -CUGUCCUa----CCGCCu---UUUCuaGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 65391 | 1.08 | 0.02725 |
Target: 5'- gGACAGGAUGGCGGAAAAGAUCAACCUc -3' miRNA: 3'- -CUGUCCUACCGCCUUUUCUAGUUGGA- -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 20858 | 0.67 | 0.999502 |
Target: 5'- aGGCGGGGgcggaGGUGGAugccuccaGAGGAUUGGCCc -3' miRNA: 3'- -CUGUCCUa----CCGCCU--------UUUCUAGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 10382 | 0.67 | 0.999386 |
Target: 5'- cGACGGG--GGUGGAGAAGG-CAGCg- -3' miRNA: 3'- -CUGUCCuaCCGCCUUUUCUaGUUGga -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 226215 | 0.68 | 0.998087 |
Target: 5'- gGACAGGggGGUGGcguGGG-CGGCCg -3' miRNA: 3'- -CUGUCCuaCCGCCuuuUCUaGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 66836 | 0.67 | 0.999502 |
Target: 5'- --aGGGAUGGCGGAuccGAUCuuGGCUUu -3' miRNA: 3'- cugUCCUACCGCCUuuuCUAG--UUGGA- -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 298736 | 0.68 | 0.998397 |
Target: 5'- aGCGGGAugaUGGCGGAAAuAGuuUCAugCa -3' miRNA: 3'- cUGUCCU---ACCGCCUUU-UCu-AGUugGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 172314 | 0.67 | 0.999386 |
Target: 5'- gGACAGGAggugGGUGGAAAcggcaaaaaaGGA-CAAUCa -3' miRNA: 3'- -CUGUCCUa---CCGCCUUU----------UCUaGUUGGa -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 111546 | 0.67 | 0.999502 |
Target: 5'- aGAgGGaGAUGGCGGAGA----CGACCUu -3' miRNA: 3'- -CUgUC-CUACCGCCUUUucuaGUUGGA- -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 301705 | 0.66 | 0.99984 |
Target: 5'- cGACAgccuGGAcccGGCGGAcaugaacaaGAAGAUCAGCg- -3' miRNA: 3'- -CUGU----CCUa--CCGCCU---------UUUCUAGUUGga -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 201055 | 0.68 | 0.998891 |
Target: 5'- cGAgGGGGUGGgGGGAucgccGAGGUCGgagagggcACCUu -3' miRNA: 3'- -CUgUCCUACCgCCUU-----UUCUAGU--------UGGA- -5' |
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10469 | 5' | -49.9 | NC_002687.1 | + | 307178 | 0.67 | 0.999248 |
Target: 5'- gGGCaAGGGUGGUGGAucuGAGAccccuUUGACCc -3' miRNA: 3'- -CUG-UCCUACCGCCUu--UUCU-----AGUUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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