miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10469 5' -49.9 NC_002687.1 + 10382 0.67 0.999386
Target:  5'- cGACGGG--GGUGGAGAAGG-CAGCg- -3'
miRNA:   3'- -CUGUCCuaCCGCCUUUUCUaGUUGga -5'
10469 5' -49.9 NC_002687.1 + 172314 0.67 0.999386
Target:  5'- gGACAGGAggugGGUGGAAAcggcaaaaaaGGA-CAAUCa -3'
miRNA:   3'- -CUGUCCUa---CCGCCUUU----------UCUaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 199806 0.67 0.999386
Target:  5'- gGACgcgAGGA-GGUGGAGgcGAUCGACUc -3'
miRNA:   3'- -CUG---UCCUaCCGCCUUuuCUAGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 307178 0.67 0.999248
Target:  5'- gGGCaAGGGUGGUGGAucuGAGAccccuUUGACCc -3'
miRNA:   3'- -CUG-UCCUACCGCCUu--UUCU-----AGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 11014 0.68 0.999084
Target:  5'- aACAGGggGGaGGAAAAcGAcuUCAGCCa -3'
miRNA:   3'- cUGUCCuaCCgCCUUUU-CU--AGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 201055 0.68 0.998891
Target:  5'- cGAgGGGGUGGgGGGAucgccGAGGUCGgagagggcACCUu -3'
miRNA:   3'- -CUgUCCUACCgCCUU-----UUCUAGU--------UGGA- -5'
10469 5' -49.9 NC_002687.1 + 281804 0.68 0.998663
Target:  5'- -------cGGCGGAAGAGAUCGACg- -3'
miRNA:   3'- cuguccuaCCGCCUUUUCUAGUUGga -5'
10469 5' -49.9 NC_002687.1 + 298736 0.68 0.998397
Target:  5'- aGCGGGAugaUGGCGGAAAuAGuuUCAugCa -3'
miRNA:   3'- cUGUCCU---ACCGCCUUU-UCu-AGUugGa -5'
10469 5' -49.9 NC_002687.1 + 226215 0.68 0.998087
Target:  5'- gGACAGGggGGUGGcguGGG-CGGCCg -3'
miRNA:   3'- -CUGUCCuaCCGCCuuuUCUaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 225657 0.68 0.998087
Target:  5'- gGACAGGggGGUGGcguGGG-CGGCCg -3'
miRNA:   3'- -CUGUCCuaCCGCCuuuUCUaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 170528 0.69 0.997316
Target:  5'- aACAGGGggaccUGGCGGAAgcGcgCAAUCUu -3'
miRNA:   3'- cUGUCCU-----ACCGCCUUuuCuaGUUGGA- -5'
10469 5' -49.9 NC_002687.1 + 62424 0.69 0.996843
Target:  5'- uGAUAGGAUcGCGGAu--GAUCAcgcggcGCCUg -3'
miRNA:   3'- -CUGUCCUAcCGCCUuuuCUAGU------UGGA- -5'
10469 5' -49.9 NC_002687.1 + 281947 0.69 0.996843
Target:  5'- cGGCAGGAgcaggGGCGGugccGGGGggCAAUCg -3'
miRNA:   3'- -CUGUCCUa----CCGCCu---UUUCuaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 325695 0.69 0.996843
Target:  5'- gGGCAGGAUGGCGcuuAGAGAUgu-CCg -3'
miRNA:   3'- -CUGUCCUACCGCcu-UUUCUAguuGGa -5'
10469 5' -49.9 NC_002687.1 + 226401 0.7 0.994212
Target:  5'- gGACAGGggGGUGGuguGGG-CGGCCg -3'
miRNA:   3'- -CUGUCCuaCCGCCuuuUCUaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 297523 0.7 0.991258
Target:  5'- cGACcGGAgaaagGGCGGGAcAGGUCGGCa- -3'
miRNA:   3'- -CUGuCCUa----CCGCCUUuUCUAGUUGga -5'
10469 5' -49.9 NC_002687.1 + 3702 0.71 0.988703
Target:  5'- cGACuGGuUGGUGGAGAGGucagcggCAGCCUu -3'
miRNA:   3'- -CUGuCCuACCGCCUUUUCua-----GUUGGA- -5'
10469 5' -49.9 NC_002687.1 + 291060 0.71 0.987225
Target:  5'- gGAgAGaGAaGGCGGggGAGggCAACCc -3'
miRNA:   3'- -CUgUC-CUaCCGCCuuUUCuaGUUGGa -5'
10469 5' -49.9 NC_002687.1 + 175837 0.71 0.985602
Target:  5'- -cCGGGGUGGCauGGGAAcGAUCAugCUc -3'
miRNA:   3'- cuGUCCUACCG--CCUUUuCUAGUugGA- -5'
10469 5' -49.9 NC_002687.1 + 103518 0.72 0.975032
Target:  5'- cGACGGGAUGuguGCGGggGAGAU--GCUUg -3'
miRNA:   3'- -CUGUCCUAC---CGCCuuUUCUAguUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.