Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 41485 | 1.14 | 0.000622 |
Target: 5'- uGCCGCCGCCAGAGAAUAUGACAGGCCu -3' miRNA: 3'- -CGGCGGCGGUCUCUUAUACUGUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 54011 | 0.74 | 0.320735 |
Target: 5'- -aCGCCGCguGAGGAUGgcGCGGGCg -3' miRNA: 3'- cgGCGGCGguCUCUUAUacUGUCCGg -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 55097 | 0.72 | 0.443875 |
Target: 5'- cCCGUCGCCGuGAGcuUAUccGugAGGCCg -3' miRNA: 3'- cGGCGGCGGU-CUCuuAUA--CugUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 29410 | 0.71 | 0.493867 |
Target: 5'- -aCGCCGCCAGAGAuaaacuCAGaGCUg -3' miRNA: 3'- cgGCGGCGGUCUCUuauacuGUC-CGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 52857 | 0.7 | 0.552695 |
Target: 5'- uGCCGCCGCCuuacccuuaccacGGGcaccaaAUGcCAGGCCa -3' miRNA: 3'- -CGGCGGCGGu------------CUCuua---UACuGUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 23958 | 0.7 | 0.535636 |
Target: 5'- cGCUGguugauaaauuCCGUgCAGAccuggcGGAUAUGGCAGGCCa -3' miRNA: 3'- -CGGC-----------GGCG-GUCU------CUUAUACUGUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 31789 | 0.69 | 0.600337 |
Target: 5'- cGUCGCCGCUGGAuGGAUAccGAUgAGGCa -3' miRNA: 3'- -CGGCGGCGGUCU-CUUAUa-CUG-UCCGg -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 47317 | 0.68 | 0.632064 |
Target: 5'- aGCCGaacaggaUCGCCAGAuGAAUAuucUGACGGGg- -3' miRNA: 3'- -CGGC-------GGCGGUCU-CUUAU---ACUGUCCgg -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 14673 | 0.68 | 0.644111 |
Target: 5'- uCCGCCGCCAGuGggUu---CuGGCUu -3' miRNA: 3'- cGGCGGCGGUCuCuuAuacuGuCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 49887 | 0.68 | 0.670332 |
Target: 5'- uGCUGCCGCCAuugcacucugccccuGugcacuuacaguGGAAUggGUGAuCAGGCCc -3' miRNA: 3'- -CGGCGGCGGU---------------C------------UCUUA--UACU-GUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 43200 | 0.67 | 0.6985 |
Target: 5'- aUUGUCGCCGGAaaaGAcaGUGaagGCAGGCCu -3' miRNA: 3'- cGGCGGCGGUCU---CUuaUAC---UGUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 51394 | 0.67 | 0.717761 |
Target: 5'- cGCCGCugguCGCCAGGGGGaaacacucgaggGUGACAuGGUUc -3' miRNA: 3'- -CGGCG----GCGGUCUCUUa-----------UACUGU-CCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 3984 | 0.66 | 0.781611 |
Target: 5'- uGCCGCUGCauaccGGUAUGGCGGcGCUu -3' miRNA: 3'- -CGGCGGCGgucucUUAUACUGUC-CGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 662 | 0.66 | 0.788498 |
Target: 5'- aGCCaCUGuCCAGAGGuuuuuggucuguugAUgAUGGCAGGCa -3' miRNA: 3'- -CGGcGGC-GGUCUCU--------------UA-UACUGUCCGg -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 51208 | 0.66 | 0.781611 |
Target: 5'- gGCgCGuuGCCAcGGGcaa--GGCGGGCCu -3' miRNA: 3'- -CG-GCggCGGU-CUCuuauaCUGUCCGG- -5' |
|||||||
1047 | 5' | -54.8 | NC_000924.1 | + | 14166 | 0.66 | 0.771642 |
Target: 5'- aCCGCCGCagAGuGGAUGuuUGACAuGGUg -3' miRNA: 3'- cGGCGGCGg-UCuCUUAU--ACUGU-CCGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home