miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10483 3' -54.2 NC_002687.1 + 298414 0.66 0.996387
Target:  5'- aCCGGGccuccguggcgcaaaUGGcgUGAGGAguCGGGGAaugcguucaaAAAGGc -3'
miRNA:   3'- aGGCCC---------------ACC--AUUCCU--GCCCCU----------UUUCC- -5'
10483 3' -54.2 NC_002687.1 + 130766 0.66 0.995569
Target:  5'- gUCCGGuuUGGUcgGAGGAgGGGGu---GGu -3'
miRNA:   3'- -AGGCCc-ACCA--UUCCUgCCCCuuuuCC- -5'
10483 3' -54.2 NC_002687.1 + 231701 0.66 0.995569
Target:  5'- uUCauGGUGGUGGGGAggcaccgaCGGGuGAAGucuuuAGGg -3'
miRNA:   3'- -AGgcCCACCAUUCCU--------GCCC-CUUU-----UCC- -5'
10483 3' -54.2 NC_002687.1 + 309993 0.66 0.995569
Target:  5'- --aGGGUGGUuuggccgauguAGGGA-GGGGA--GGGa -3'
miRNA:   3'- aggCCCACCA-----------UUCCUgCCCCUuuUCC- -5'
10483 3' -54.2 NC_002687.1 + 309504 0.66 0.995505
Target:  5'- cUCaGGGUcGUGAgcgugguGGACGGGGAGcuGGu -3'
miRNA:   3'- -AGgCCCAcCAUU-------CCUGCCCCUUuuCC- -5'
10483 3' -54.2 NC_002687.1 + 330764 0.66 0.994897
Target:  5'- --aGGaUGGggGAGGAgGGGGAGAaucGGGg -3'
miRNA:   3'- aggCCcACCa-UUCCUgCCCCUUU---UCC- -5'
10483 3' -54.2 NC_002687.1 + 35727 0.66 0.994144
Target:  5'- ---uGGUGGc--GGcCGGGGAGAAGGu -3'
miRNA:   3'- aggcCCACCauuCCuGCCCCUUUUCC- -5'
10483 3' -54.2 NC_002687.1 + 33841 0.66 0.993305
Target:  5'- cUCGuuuGUGGUGucauACGGGGAGAAGGa -3'
miRNA:   3'- aGGCc--CACCAUucc-UGCCCCUUUUCC- -5'
10483 3' -54.2 NC_002687.1 + 22409 0.68 0.984413
Target:  5'- gCCGGGaacccuggaGGUAGGGuuacaaaGGGGAauuAAAGGg -3'
miRNA:   3'- aGGCCCa--------CCAUUCCug-----CCCCU---UUUCC- -5'
10483 3' -54.2 NC_002687.1 + 278119 0.68 0.978381
Target:  5'- aUCCGGGUGGgggugguugGugcccgauuauccGGGugGGGGu---GGa -3'
miRNA:   3'- -AGGCCCACCa--------U-------------UCCugCCCCuuuuCC- -5'
10483 3' -54.2 NC_002687.1 + 241961 0.69 0.973918
Target:  5'- -aCGGGgcaagagGGUGcgagaGGGGCGuGGGAGAAGu -3'
miRNA:   3'- agGCCCa------CCAU-----UCCUGC-CCCUUUUCc -5'
10483 3' -54.2 NC_002687.1 + 270408 0.69 0.973918
Target:  5'- cUUCGGGcgGGgcugcGGAgGGGGAcAAGGa -3'
miRNA:   3'- -AGGCCCa-CCauu--CCUgCCCCUuUUCC- -5'
10483 3' -54.2 NC_002687.1 + 11176 0.69 0.968247
Target:  5'- -aCGGG-GGUGcaaauguggcaccGGGACGGGcGAGccAAGGa -3'
miRNA:   3'- agGCCCaCCAU-------------UCCUGCCC-CUU--UUCC- -5'
10483 3' -54.2 NC_002687.1 + 242010 0.69 0.965567
Target:  5'- -gUGGaGUGaGcGAGGugGGGGAGAGGa -3'
miRNA:   3'- agGCC-CAC-CaUUCCugCCCCUUUUCc -5'
10483 3' -54.2 NC_002687.1 + 316024 0.7 0.955493
Target:  5'- gCCGauGGUgccGGUGGGGACGGuGGGGAcGGu -3'
miRNA:   3'- aGGC--CCA---CCAUUCCUGCC-CCUUUuCC- -5'
10483 3' -54.2 NC_002687.1 + 10480 0.7 0.954757
Target:  5'- gCCGGGUccGGUGgcacaucGGGugccgugucggauGCGGGGAcgGAGGGg -3'
miRNA:   3'- aGGCCCA--CCAU-------UCC-------------UGCCCCU--UUUCC- -5'
10483 3' -54.2 NC_002687.1 + 20583 0.7 0.947764
Target:  5'- aUCCGGG-GGUAaccuacacAGugccucugaaGACGGGGAAGugGGGa -3'
miRNA:   3'- -AGGCCCaCCAU--------UC----------CUGCCCCUUU--UCC- -5'
10483 3' -54.2 NC_002687.1 + 133629 0.7 0.947764
Target:  5'- cCCGcGUGGUAgaugucguGGGACGGGaGAAAcacccGGGa -3'
miRNA:   3'- aGGCcCACCAU--------UCCUGCCC-CUUU-----UCC- -5'
10483 3' -54.2 NC_002687.1 + 284443 0.71 0.924739
Target:  5'- uUCgGGGUcGGaAGcGGugGGGGGAGAGa -3'
miRNA:   3'- -AGgCCCA-CCaUU-CCugCCCCUUUUCc -5'
10483 3' -54.2 NC_002687.1 + 225595 0.71 0.924739
Target:  5'- --gGGGUGGUGcuGGaGACGGcGGAGGAGu -3'
miRNA:   3'- aggCCCACCAU--UC-CUGCC-CCUUUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.