miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10483 5' -66.7 NC_002687.1 + 5890 0.66 0.640873
Target:  5'- cGCagCgGUCUGaGCgCCGCUGGucguccCCCCGCg -3'
miRNA:   3'- cCG--GgCAGAC-CGgGGCGACC------GGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 72731 0.66 0.62268
Target:  5'- cGUCCGUCauaaGcGCCCaCGCUGaCCCCAa -3'
miRNA:   3'- cCGGGCAGa---C-CGGG-GCGACcGGGGUg -5'
10483 5' -66.7 NC_002687.1 + 194136 0.66 0.613589
Target:  5'- cGUCCGcCUGcGCCCgcuCGuUUGGCCCCGg -3'
miRNA:   3'- cCGGGCaGAC-CGGG---GC-GACCGGGGUg -5'
10483 5' -66.7 NC_002687.1 + 301540 0.66 0.604509
Target:  5'- gGGCCCGUCaagaUGcGUCCC-CgGGCaacCCCACg -3'
miRNA:   3'- -CCGGGCAG----AC-CGGGGcGaCCG---GGGUG- -5'
10483 5' -66.7 NC_002687.1 + 181641 0.67 0.595445
Target:  5'- cGGCUUugCUGGCUuuGCUGGCUUUACn -3'
miRNA:   3'- -CCGGGcaGACCGGggCGACCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 226948 0.67 0.55945
Target:  5'- cGGUCCcaUUGGUCCCaUUGGUCCCAUc -3'
miRNA:   3'- -CCGGGcaGACCGGGGcGACCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 240053 0.67 0.55945
Target:  5'- uGGCggCGUCUGGaCCgUGCUGGUCgUACa -3'
miRNA:   3'- -CCGg-GCAGACC-GGgGCGACCGGgGUG- -5'
10483 5' -66.7 NC_002687.1 + 137352 0.68 0.532855
Target:  5'- -cCCUGUC-GGCgUCgaagacggGCUGGCCCCACa -3'
miRNA:   3'- ccGGGCAGaCCGgGG--------CGACCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 181668 0.68 0.506727
Target:  5'- cGGCUUugCUGGCUuuGCUGGCUuuGCu -3'
miRNA:   3'- -CCGGGcaGACCGGggCGACCGGggUG- -5'
10483 5' -66.7 NC_002687.1 + 329197 0.68 0.489615
Target:  5'- -uCCUuUCuUGGCCCCGUUGaCCCCGCu -3'
miRNA:   3'- ccGGGcAG-ACCGGGGCGACcGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 85352 0.69 0.472777
Target:  5'- gGGuCCCGUC-GGUCCgGCgGGUgCCACc -3'
miRNA:   3'- -CC-GGGCAGaCCGGGgCGaCCGgGGUG- -5'
10483 5' -66.7 NC_002687.1 + 6726 0.69 0.471943
Target:  5'- aGGCUCaugucucgcagcgGUCUGaGCgCCGCUGGucguccCCCCGCg -3'
miRNA:   3'- -CCGGG-------------CAGAC-CGgGGCGACC------GGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 25187 0.69 0.43921
Target:  5'- cGGCCCGUUcgcgugucucgguUGuGCCaagCCGCUGGUUCUGCg -3'
miRNA:   3'- -CCGGGCAG-------------AC-CGG---GGCGACCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 85602 0.71 0.369163
Target:  5'- gGGCCCGag-GGUCCCGCggagucuguagaagUGGUUCCACc -3'
miRNA:   3'- -CCGGGCagaCCGGGGCG--------------ACCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 97818 0.72 0.323187
Target:  5'- cGGCaCCG-CUGGCaCUGCUGGCaCCGCu -3'
miRNA:   3'- -CCG-GGCaGACCGgGGCGACCGgGGUG- -5'
10483 5' -66.7 NC_002687.1 + 98028 0.72 0.316702
Target:  5'- cGGCagCCGUCgaGGCCCUagGCUucggGGCCCUACg -3'
miRNA:   3'- -CCG--GGCAGa-CCGGGG--CGA----CCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 85289 0.72 0.29784
Target:  5'- aGGCCUccCUGGUCCCGUgGGUCCCGu -3'
miRNA:   3'- -CCGGGcaGACCGGGGCGaCCGGGGUg -5'
10483 5' -66.7 NC_002687.1 + 85316 0.75 0.202727
Target:  5'- gGGuCCCGUC-GGUCCCGUcGGUCCCAUc -3'
miRNA:   3'- -CC-GGGCAGaCCGGGGCGaCCGGGGUG- -5'
10483 5' -66.7 NC_002687.1 + 97783 0.75 0.193963
Target:  5'- uGGCaCCG-CUGGCaCCGCUGGCCCaccgGCa -3'
miRNA:   3'- -CCG-GGCaGACCGgGGCGACCGGGg---UG- -5'
10483 5' -66.7 NC_002687.1 + 85262 0.77 0.141461
Target:  5'- gGGCCCuaagGGUCCCGCUGGCCCaCAa -3'
miRNA:   3'- -CCGGGcagaCCGGGGCGACCGGG-GUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.