miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10489 5' -51 NC_002687.1 + 205512 0.66 0.999724
Target:  5'- aCgAUUCCgAGGUGuacGGCGcGACGGUg -3'
miRNA:   3'- -GgUAAGGaUCCACuu-CCGC-UUGUCGa -5'
10489 5' -51 NC_002687.1 + 145355 0.66 0.999724
Target:  5'- gCGUa-CUGGGUGAAcGCGAuCGGCUa -3'
miRNA:   3'- gGUAagGAUCCACUUcCGCUuGUCGA- -5'
10489 5' -51 NC_002687.1 + 254316 0.66 0.999655
Target:  5'- cCUcgUCC-AGGaucacgagcuUGaAAGGCGGACAGCc -3'
miRNA:   3'- -GGuaAGGaUCC----------AC-UUCCGCUUGUCGa -5'
10489 5' -51 NC_002687.1 + 307737 0.66 0.999472
Target:  5'- gCCAUggCCaucGGcGAGGGCGccGACAGCg -3'
miRNA:   3'- -GGUAa-GGau-CCaCUUCCGC--UUGUCGa -5'
10489 5' -51 NC_002687.1 + 259789 0.67 0.99927
Target:  5'- uCCAUUUCUcgagcgauguucauGGccAAGGCGGGCAGCg -3'
miRNA:   3'- -GGUAAGGAu-------------CCacUUCCGCUUGUCGa -5'
10489 5' -51 NC_002687.1 + 78455 0.67 0.99921
Target:  5'- gCAcgCCU--GUGGAGGCGAACGGg- -3'
miRNA:   3'- gGUaaGGAucCACUUCCGCUUGUCga -5'
10489 5' -51 NC_002687.1 + 174849 0.67 0.999113
Target:  5'- cCCAUUCCuccaucucgugacgaUacucgAGGUGAAGGCGAucCAuGCa -3'
miRNA:   3'- -GGUAAGG---------------A-----UCCACUUCCGCUu-GU-CGa -5'
10489 5' -51 NC_002687.1 + 73344 0.67 0.999042
Target:  5'- gCCGUaugcUCCggagacGGUGAcGGCG-ACAGCa -3'
miRNA:   3'- -GGUA----AGGau----CCACUuCCGCuUGUCGa -5'
10489 5' -51 NC_002687.1 + 78258 0.68 0.998028
Target:  5'- cCCAUucgccUCCUccgAGGUGGAGGgGAAUaccgucgacgugAGCUu -3'
miRNA:   3'- -GGUA-----AGGA---UCCACUUCCgCUUG------------UCGA- -5'
10489 5' -51 NC_002687.1 + 83263 0.68 0.997666
Target:  5'- uCCAaUCCgugaaGGGUGAcGGGUuGACAGCa -3'
miRNA:   3'- -GGUaAGGa----UCCACU-UCCGcUUGUCGa -5'
10489 5' -51 NC_002687.1 + 37960 0.69 0.994147
Target:  5'- aCCAUggagaaaCUUAGaGUGGAGGagaGAACAGCc -3'
miRNA:   3'- -GGUAa------GGAUC-CACUUCCg--CUUGUCGa -5'
10489 5' -51 NC_002687.1 + 332265 0.7 0.985635
Target:  5'- aCCAUUgcggcggcggcgCUUGGGcgUGGAGGCGAuuGCGGCa -3'
miRNA:   3'- -GGUAA------------GGAUCC--ACUUCCGCU--UGUCGa -5'
10489 5' -51 NC_002687.1 + 299348 0.7 0.983888
Target:  5'- gCC-UUCCUcGGUGcuccgGAGGCGGgcGCAGCg -3'
miRNA:   3'- -GGuAAGGAuCCAC-----UUCCGCU--UGUCGa -5'
10489 5' -51 NC_002687.1 + 280957 0.71 0.981985
Target:  5'- gCGggggCCUGGGUGgcGGC-AGCGGCg -3'
miRNA:   3'- gGUaa--GGAUCCACuuCCGcUUGUCGa -5'
10489 5' -51 NC_002687.1 + 99704 1.11 0.014045
Target:  5'- cCCAUUCCUAGGUGAAGGCGAACAGCUg -3'
miRNA:   3'- -GGUAAGGAUCCACUUCCGCUUGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.