miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1049 5' -55.9 NC_000924.1 + 33128 0.66 0.736004
Target:  5'- cGCGAGauggCUGGCagaguggcaaaACUGGAAgcuGACGCCGc -3'
miRNA:   3'- -UGUUCga--GGCCG-----------UGGCCUU---UUGCGGC- -5'
1049 5' -55.9 NC_000924.1 + 27840 0.66 0.725552
Target:  5'- cACcuGCUCCGGUACCGuGcgugaaGCCa -3'
miRNA:   3'- -UGuuCGAGGCCGUGGC-Cuuuug-CGGc -5'
1049 5' -55.9 NC_000924.1 + 39332 0.66 0.724502
Target:  5'- aGCAGG-UCCGGCuggGCCgaagggugauaagGGAGAGCGCgGu -3'
miRNA:   3'- -UGUUCgAGGCCG---UGG-------------CCUUUUGCGgC- -5'
1049 5' -55.9 NC_000924.1 + 6338 0.66 0.719237
Target:  5'- -aAGGCUCUGGCcUgGGGAaaacaguacgagaacGACGCCa -3'
miRNA:   3'- ugUUCGAGGCCGuGgCCUU---------------UUGCGGc -5'
1049 5' -55.9 NC_000924.1 + 50483 0.66 0.71501
Target:  5'- cGC-AGCUCau-CGCCGGGAAGCuGCCa -3'
miRNA:   3'- -UGuUCGAGgccGUGGCCUUUUG-CGGc -5'
1049 5' -55.9 NC_000924.1 + 15211 0.66 0.682947
Target:  5'- cGCAuaauAGCuUCUGuGCGCCGGAcguUGCCGc -3'
miRNA:   3'- -UGU----UCG-AGGC-CGUGGCCUuuuGCGGC- -5'
1049 5' -55.9 NC_000924.1 + 46894 0.67 0.67215
Target:  5'- gGCGGuGCUaaaaacCUGGCACCGGcgcuAAUGCCa -3'
miRNA:   3'- -UGUU-CGA------GGCCGUGGCCuu--UUGCGGc -5'
1049 5' -55.9 NC_000924.1 + 35580 0.67 0.617816
Target:  5'- -gGGGCUCaGGCGCUGGcAAAUGCUu -3'
miRNA:   3'- ugUUCGAGgCCGUGGCCuUUUGCGGc -5'
1049 5' -55.9 NC_000924.1 + 24987 0.67 0.616728
Target:  5'- uGCAGGCUguuauucCCGGCAaagCGGAAAGCcagcguauGCCa -3'
miRNA:   3'- -UGUUCGA-------GGCCGUg--GCCUUUUG--------CGGc -5'
1049 5' -55.9 NC_000924.1 + 51258 0.68 0.606948
Target:  5'- gACAGGgauaUCCGuuACCGGGAGaaguggcgcguACGCCGg -3'
miRNA:   3'- -UGUUCg---AGGCcgUGGCCUUU-----------UGCGGC- -5'
1049 5' -55.9 NC_000924.1 + 32110 0.68 0.574505
Target:  5'- -uGAGUUCaauCACCGGAAGACGCuCGa -3'
miRNA:   3'- ugUUCGAGgccGUGGCCUUUUGCG-GC- -5'
1049 5' -55.9 NC_000924.1 + 41394 0.68 0.563773
Target:  5'- gGCAuucuGCaaUGGCACCGGAGccAGCGUCa -3'
miRNA:   3'- -UGUu---CGagGCCGUGGCCUU--UUGCGGc -5'
1049 5' -55.9 NC_000924.1 + 53818 0.69 0.553094
Target:  5'- uACAGGCgggugaauuUCUGGCACauauggCGGAGAAacaGCCGa -3'
miRNA:   3'- -UGUUCG---------AGGCCGUG------GCCUUUUg--CGGC- -5'
1049 5' -55.9 NC_000924.1 + 41305 0.7 0.480427
Target:  5'- cGCuGGCUCCGGUGCCauuGcAGAAUGCCa -3'
miRNA:   3'- -UGuUCGAGGCCGUGGc--C-UUUUGCGGc -5'
1049 5' -55.9 NC_000924.1 + 39575 0.71 0.430529
Target:  5'- gGCAGGC-CCGGUgggggcgACCGGAccucAGGgGCCGa -3'
miRNA:   3'- -UGUUCGaGGCCG-------UGGCCU----UUUgCGGC- -5'
1049 5' -55.9 NC_000924.1 + 24489 0.71 0.422041
Target:  5'- --uGGCUUCuGCACCGGAAGGCGaugaCGg -3'
miRNA:   3'- uguUCGAGGcCGUGGCCUUUUGCg---GC- -5'
1049 5' -55.9 NC_000924.1 + 29789 0.73 0.303944
Target:  5'- uGCAuGCUCCGGaacaACUGGcgcuGCGCCGg -3'
miRNA:   3'- -UGUuCGAGGCCg---UGGCCuuu-UGCGGC- -5'
1049 5' -55.9 NC_000924.1 + 38554 0.76 0.212939
Target:  5'- -aAGGCcaggCUGGCGCaGGAGAGCGCCGg -3'
miRNA:   3'- ugUUCGa---GGCCGUGgCCUUUUGCGGC- -5'
1049 5' -55.9 NC_000924.1 + 51372 1.08 0.001236
Target:  5'- gACAAGCUCCGGCACCGGAAAACGCCGc -3'
miRNA:   3'- -UGUUCGAGGCCGUGGCCUUUUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.