miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 3' -58.5 NC_002687.1 + 279663 0.66 0.928665
Target:  5'- gCGUCAGGGuCCGCuGAcucuucugguGGGCcggUGguGCCg -3'
miRNA:   3'- gGCGGUUCC-GGUG-CU----------UCCG---ACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 96486 0.66 0.928665
Target:  5'- aCCGCacgGGGGCCGCGAAccGCcaUGUcGCCg -3'
miRNA:   3'- -GGCGg--UUCCGGUGCUUc-CG--ACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 330953 0.66 0.928665
Target:  5'- aUGCCAcGuacgugaaucGCCACGAcGGCUGcCGGCa -3'
miRNA:   3'- gGCGGUuC----------CGGUGCUuCCGAC-GUCGg -5'
10491 3' -58.5 NC_002687.1 + 226997 0.66 0.928665
Target:  5'- gCGCCAAuGCCACaGAauguugggguGGGUUuGUGGCCa -3'
miRNA:   3'- gGCGGUUcCGGUG-CU----------UCCGA-CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 72212 0.66 0.928665
Target:  5'- gCGCCAGGGUUAcCGAcuggccAGGCccgGCGgauGCCg -3'
miRNA:   3'- gGCGGUUCCGGU-GCU------UCCGa--CGU---CGG- -5'
10491 3' -58.5 NC_002687.1 + 140233 0.67 0.923662
Target:  5'- gUGCaCAcagcGGCCACGAAGGacacaaCUGCGcacGCCa -3'
miRNA:   3'- gGCG-GUu---CCGGUGCUUCC------GACGU---CGG- -5'
10491 3' -58.5 NC_002687.1 + 86081 0.67 0.923662
Target:  5'- -gGCCAgcgGGGCCAgcGGGGCcagUGgGGCCa -3'
miRNA:   3'- ggCGGU---UCCGGUgcUUCCG---ACgUCGG- -5'
10491 3' -58.5 NC_002687.1 + 45055 0.67 0.923662
Target:  5'- aCGCCGGGGaacaCACGGAGGUaacGC-GCa -3'
miRNA:   3'- gGCGGUUCCg---GUGCUUCCGa--CGuCGg -5'
10491 3' -58.5 NC_002687.1 + 55562 0.67 0.923662
Target:  5'- -aGUCGAuGGCCuuGGccGGGUUGguGCCu -3'
miRNA:   3'- ggCGGUU-CCGGugCU--UCCGACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 308860 0.67 0.923662
Target:  5'- cCCGCUgcucgguggugGGGGCgucaGCGggGGCucccUGCucGGCCg -3'
miRNA:   3'- -GGCGG-----------UUCCGg---UGCuuCCG----ACG--UCGG- -5'
10491 3' -58.5 NC_002687.1 + 212381 0.67 0.923662
Target:  5'- -gGUCGAcGUgGCGAGGGggGCGGCCu -3'
miRNA:   3'- ggCGGUUcCGgUGCUUCCgaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 6317 0.67 0.918451
Target:  5'- aCCgGCCuuGGCCAUGggGGUgcugUGC-GCg -3'
miRNA:   3'- -GG-CGGuuCCGGUGCuuCCG----ACGuCGg -5'
10491 3' -58.5 NC_002687.1 + 236742 0.67 0.918451
Target:  5'- uCCGCgGAaGCCGCGuGAGcCUGCccAGCCg -3'
miRNA:   3'- -GGCGgUUcCGGUGC-UUCcGACG--UCGG- -5'
10491 3' -58.5 NC_002687.1 + 159194 0.67 0.918451
Target:  5'- gCCGCCuccGGGCUuucgacCGgcGGCgacgGCGGUCc -3'
miRNA:   3'- -GGCGGu--UCCGGu-----GCuuCCGa---CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 308407 0.67 0.917918
Target:  5'- cCCGucuucauCCGAGGCCcCGggGgauGCUGCA-CCa -3'
miRNA:   3'- -GGC-------GGUUCCGGuGCuuC---CGACGUcGG- -5'
10491 3' -58.5 NC_002687.1 + 329119 0.67 0.916847
Target:  5'- uUCGCCGAugcucuuGGCCAcCGAuccuuggggucuGGUaGCAGCCu -3'
miRNA:   3'- -GGCGGUU-------CCGGU-GCUu-----------CCGaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 77721 0.67 0.913031
Target:  5'- -gGCaCAAGGCCAaaGAGGCgauGGCCg -3'
miRNA:   3'- ggCG-GUUCCGGUgcUUCCGacgUCGG- -5'
10491 3' -58.5 NC_002687.1 + 212501 0.67 0.913031
Target:  5'- gUGCCAGuGGCguggGCGAGuGGCUGCAGa- -3'
miRNA:   3'- gGCGGUU-CCGg---UGCUU-CCGACGUCgg -5'
10491 3' -58.5 NC_002687.1 + 277494 0.67 0.913031
Target:  5'- cUCGUCGGcGGCCAuCGGAcgacccGGCUuGCAGUCu -3'
miRNA:   3'- -GGCGGUU-CCGGU-GCUU------CCGA-CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 96961 0.67 0.913031
Target:  5'- aUGUCGAGGCCugcacCGGAGcccuGCUGCucuucGCCa -3'
miRNA:   3'- gGCGGUUCCGGu----GCUUC----CGACGu----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.