miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 5' -57.2 NC_002687.1 + 200539 0.68 0.867578
Target:  5'- gAAGGCUGgAGCCGacgucgacgcucGGGCGGaagaCGGCAu -3'
miRNA:   3'- -UUCCGACgUCGGU------------UCUGCCg---GUUGUu -5'
10491 5' -57.2 NC_002687.1 + 225069 0.73 0.571146
Target:  5'- uGGGGCUGCAGCCGgAGAggaacguggUGGCgCAACAc -3'
miRNA:   3'- -UUCCGACGUCGGU-UCU---------GCCG-GUUGUu -5'
10491 5' -57.2 NC_002687.1 + 159936 0.73 0.600933
Target:  5'- aGAGGCaaagGaAGCCGGGGCGGCCAagGCAGc -3'
miRNA:   3'- -UUCCGa---CgUCGGUUCUGCCGGU--UGUU- -5'
10491 5' -57.2 NC_002687.1 + 103033 0.7 0.729727
Target:  5'- gAAGGCUGCAGCCAAGGCcGCn----- -3'
miRNA:   3'- -UUCCGACGUCGGUUCUGcCGguuguu -5'
10491 5' -57.2 NC_002687.1 + 233791 0.7 0.748791
Target:  5'- cGAGGCaGCGcguGCCAAaGCGGCCAugAAa -3'
miRNA:   3'- -UUCCGaCGU---CGGUUcUGCCGGUugUU- -5'
10491 5' -57.2 NC_002687.1 + 281171 0.69 0.785676
Target:  5'- uAGGCgugGgGGCCGAGGCGGCgGAa-- -3'
miRNA:   3'- uUCCGa--CgUCGGUUCUGCCGgUUguu -5'
10491 5' -57.2 NC_002687.1 + 298876 0.69 0.785676
Target:  5'- -uGGCUGCuGCCcucGGGcGCGGCCAAgGAa -3'
miRNA:   3'- uuCCGACGuCGG---UUC-UGCCGGUUgUU- -5'
10491 5' -57.2 NC_002687.1 + 259461 0.69 0.811984
Target:  5'- -uGGUgcaGCAcGCCAucaagAGAUGGCCAACAAc -3'
miRNA:   3'- uuCCGa--CGU-CGGU-----UCUGCCGGUUGUU- -5'
10491 5' -57.2 NC_002687.1 + 95030 0.69 0.828756
Target:  5'- uGGGCUcaauGuUGGCgGAGACGGCCGGCGu -3'
miRNA:   3'- uUCCGA----C-GUCGgUUCUGCCGGUUGUu -5'
10491 5' -57.2 NC_002687.1 + 4743 0.73 0.561291
Target:  5'- uGGGCaUGUAGCCGAGuACGGUgGACAc -3'
miRNA:   3'- uUCCG-ACGUCGGUUC-UGCCGgUUGUu -5'
10491 5' -57.2 NC_002687.1 + 158851 0.74 0.522398
Target:  5'- gGAGGCgGCGGCCGucGACaaGGCCAACGu -3'
miRNA:   3'- -UUCCGaCGUCGGUu-CUG--CCGGUUGUu -5'
10491 5' -57.2 NC_002687.1 + 103054 1.04 0.007422
Target:  5'- cAAGGCUGCAGCCAAGACGGCCAACAAg -3'
miRNA:   3'- -UUCCGACGUCGGUUCUGCCGGUUGUU- -5'
10491 5' -57.2 NC_002687.1 + 253977 0.68 0.867578
Target:  5'- cGAGGCgGaCA-CCAuGACGGCCGACGc -3'
miRNA:   3'- -UUCCGaC-GUcGGUuCUGCCGGUUGUu -5'
10491 5' -57.2 NC_002687.1 + 226035 0.66 0.918997
Target:  5'- gGGGGUgguguggGCGGCCGggacgaggAGACGGCUAcGCAGg -3'
miRNA:   3'- -UUCCGa------CGUCGGU--------UCUGCCGGU-UGUU- -5'
10491 5' -57.2 NC_002687.1 + 285089 0.67 0.888493
Target:  5'- gAAGGCUGguGCUuguuGGGGCGGgCGAUu- -3'
miRNA:   3'- -UUCCGACguCGG----UUCUGCCgGUUGuu -5'
10491 5' -57.2 NC_002687.1 + 225849 0.66 0.918997
Target:  5'- gGGGGUgguguggGCGGCCGggacgaggAGACGGCUAcGCAGg -3'
miRNA:   3'- -UUCCGa------CGUCGGU--------UCUGCCGGU-UGUU- -5'
10491 5' -57.2 NC_002687.1 + 226407 0.66 0.918997
Target:  5'- gGGGGUgguguggGCGGCCGggacgaggAGACGGCUAcGCAGg -3'
miRNA:   3'- -UUCCGa------CGUCGGU--------UCUGCCGGU-UGUU- -5'
10491 5' -57.2 NC_002687.1 + 200212 0.66 0.939321
Target:  5'- gGAGGCcGguGCCaAAGAuucCGGCCccGACGAc -3'
miRNA:   3'- -UUCCGaCguCGG-UUCU---GCCGG--UUGUU- -5'
10491 5' -57.2 NC_002687.1 + 122201 0.67 0.901364
Target:  5'- --cGCgGCGGCCAAGaagaagaugGCGGCCGAUGGa -3'
miRNA:   3'- uucCGaCGUCGGUUC---------UGCCGGUUGUU- -5'
10491 5' -57.2 NC_002687.1 + 225668 0.66 0.913345
Target:  5'- -uGGCguggGCGGCCGggacgaacAGACGGCUAcucagGCAGc -3'
miRNA:   3'- uuCCGa---CGUCGGU--------UCUGCCGGU-----UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.