miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10492 3' -54.4 NC_002687.1 + 91591 0.66 0.993894
Target:  5'- gAGCgcgACGACGGcUUCUUCGUUgUCGg -3'
miRNA:   3'- gUCGa--UGCUGCCcGAGAGGUAGaAGC- -5'
10492 3' -54.4 NC_002687.1 + 6297 0.66 0.993016
Target:  5'- uCAGC-ACGugGGGCUg-CCAUa-UCGg -3'
miRNA:   3'- -GUCGaUGCugCCCGAgaGGUAgaAGC- -5'
10492 3' -54.4 NC_002687.1 + 160152 0.67 0.988454
Target:  5'- gGGCauCGuCGGGCacgaUCUCUAUCUUCu -3'
miRNA:   3'- gUCGauGCuGCCCG----AGAGGUAGAAGc -5'
10492 3' -54.4 NC_002687.1 + 280975 0.67 0.981858
Target:  5'- gCAGCgGCGGcCGGGgUUUCCAUCa--- -3'
miRNA:   3'- -GUCGaUGCU-GCCCgAGAGGUAGaagc -5'
10492 3' -54.4 NC_002687.1 + 123312 0.67 0.981858
Target:  5'- gCGGUUACGACGacucGCUC-CUGUCUUCu -3'
miRNA:   3'- -GUCGAUGCUGCc---CGAGaGGUAGAAGc -5'
10492 3' -54.4 NC_002687.1 + 180257 0.68 0.979837
Target:  5'- gAGCUGCGA-GGGaggacgaugUCUgCGUCUUCGa -3'
miRNA:   3'- gUCGAUGCUgCCCg--------AGAgGUAGAAGC- -5'
10492 3' -54.4 NC_002687.1 + 296296 0.68 0.9753
Target:  5'- -cGCUACGACGGGCg--UCGUUggggUCa -3'
miRNA:   3'- guCGAUGCUGCCCGagaGGUAGa---AGc -5'
10492 3' -54.4 NC_002687.1 + 309855 0.68 0.96716
Target:  5'- gGGCUACGgcagguGCGGGCuucUCUCUGUCUa-- -3'
miRNA:   3'- gUCGAUGC------UGCCCG---AGAGGUAGAagc -5'
10492 3' -54.4 NC_002687.1 + 18366 0.69 0.964068
Target:  5'- uGGUUACGAUuuacugcuuGGCguugCUCCGUCUUCGc -3'
miRNA:   3'- gUCGAUGCUGc--------CCGa---GAGGUAGAAGC- -5'
10492 3' -54.4 NC_002687.1 + 213305 0.7 0.945553
Target:  5'- -cGCU-UGuCGGGCUCUCCGUCg-CGg -3'
miRNA:   3'- guCGAuGCuGCCCGAGAGGUAGaaGC- -5'
10492 3' -54.4 NC_002687.1 + 198752 0.7 0.941214
Target:  5'- aGGUUGcCGGCGGGaCUCU-CGUCUUCu -3'
miRNA:   3'- gUCGAU-GCUGCCC-GAGAgGUAGAAGc -5'
10492 3' -54.4 NC_002687.1 + 55026 0.72 0.879094
Target:  5'- aCGGCUAUGACGGGCaagC-CCGUCg--- -3'
miRNA:   3'- -GUCGAUGCUGCCCGa--GaGGUAGaagc -5'
10492 3' -54.4 NC_002687.1 + 104685 1.1 0.008604
Target:  5'- aCAGCUACGACGGGCUCUCCAUCUUCGa -3'
miRNA:   3'- -GUCGAUGCUGCCCGAGAGGUAGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.