miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10492 5' -53.4 NC_002687.1 + 56289 0.66 0.998736
Target:  5'- uGCaaGAGACGGCGuaauGUACGUGGuuccGGa -3'
miRNA:   3'- -CGgcUUCUGCUGCu---CAUGCACCca--CC- -5'
10492 5' -53.4 NC_002687.1 + 203094 0.66 0.998736
Target:  5'- -----cGGCGGCGGGUACGa-GGUGGu -3'
miRNA:   3'- cggcuuCUGCUGCUCAUGCacCCACC- -5'
10492 5' -53.4 NC_002687.1 + 277180 0.66 0.998667
Target:  5'- uGUCGGAGAaaugugucguuguuCGACGucgGCGUGGGUu- -3'
miRNA:   3'- -CGGCUUCU--------------GCUGCucaUGCACCCAcc -5'
10492 5' -53.4 NC_002687.1 + 225006 0.66 0.99822
Target:  5'- aGCUGGAGcUGgaGCGGGUG-GUGGcGUGGg -3'
miRNA:   3'- -CGGCUUCuGC--UGCUCAUgCACC-CACC- -5'
10492 5' -53.4 NC_002687.1 + 184076 0.66 0.998129
Target:  5'- aGCUGcAGGCGGCGguaggucacgacggGGUcGCGUGGGUu- -3'
miRNA:   3'- -CGGCuUCUGCUGC--------------UCA-UGCACCCAcc -5'
10492 5' -53.4 NC_002687.1 + 82194 0.66 0.997902
Target:  5'- aCCGAcGACGACGAcaGCGUGacggcaucGUGGg -3'
miRNA:   3'- cGGCUuCUGCUGCUcaUGCACc-------CACC- -5'
10492 5' -53.4 NC_002687.1 + 172304 0.66 0.997902
Target:  5'- gGCgGggGugGGacAGgAgGUGGGUGGa -3'
miRNA:   3'- -CGgCuuCugCUgcUCaUgCACCCACC- -5'
10492 5' -53.4 NC_002687.1 + 145418 0.66 0.997902
Target:  5'- aCCGAAGugGacacucuguacaGCGAGUGgauguuccUGUGGGaGGa -3'
miRNA:   3'- cGGCUUCugC------------UGCUCAU--------GCACCCaCC- -5'
10492 5' -53.4 NC_002687.1 + 224413 0.66 0.997902
Target:  5'- uGCCGAuacuGAUGGCGAugGCaGUGguGGUGGu -3'
miRNA:   3'- -CGGCUu---CUGCUGCUcaUG-CAC--CCACC- -5'
10492 5' -53.4 NC_002687.1 + 206016 0.66 0.997538
Target:  5'- gGCgGAGcguuuccaucGACGACGcucACGUGGGUGa -3'
miRNA:   3'- -CGgCUU----------CUGCUGCucaUGCACCCACc -5'
10492 5' -53.4 NC_002687.1 + 270928 0.67 0.997123
Target:  5'- aCCG-AGugGGCGGGUGcCGUGGacauccaUGGa -3'
miRNA:   3'- cGGCuUCugCUGCUCAU-GCACCc------ACC- -5'
10492 5' -53.4 NC_002687.1 + 207670 0.67 0.997123
Target:  5'- aGUgGGAG-UGugGAGUGCGaagaGGUGGg -3'
miRNA:   3'- -CGgCUUCuGCugCUCAUGCac--CCACC- -5'
10492 5' -53.4 NC_002687.1 + 227005 0.67 0.996117
Target:  5'- cGCCGAcgaGGACGACGAcgGaGCGgcuucgccuGGUGGu -3'
miRNA:   3'- -CGGCU---UCUGCUGCU--CaUGCac-------CCACC- -5'
10492 5' -53.4 NC_002687.1 + 48692 0.67 0.995764
Target:  5'- cGCCGaAcgauaacaaauacaaAGAUGugGcGGUAUGcGGGUGGg -3'
miRNA:   3'- -CGGC-U---------------UCUGCugC-UCAUGCaCCCACC- -5'
10492 5' -53.4 NC_002687.1 + 248178 0.67 0.995515
Target:  5'- cCCGAuGACGACGGcgaaccauacACGUGGGaGGg -3'
miRNA:   3'- cGGCUuCUGCUGCUca--------UGCACCCaCC- -5'
10492 5' -53.4 NC_002687.1 + 225647 0.67 0.995515
Target:  5'- aGCUGGAGcCGGacaGGGgggugGCGUGGGcGGc -3'
miRNA:   3'- -CGGCUUCuGCUg--CUCa----UGCACCCaCC- -5'
10492 5' -53.4 NC_002687.1 + 304178 0.67 0.995515
Target:  5'- gGCCGc-GAUGACGuuGGUGC--GGGUGGu -3'
miRNA:   3'- -CGGCuuCUGCUGC--UCAUGcaCCCACC- -5'
10492 5' -53.4 NC_002687.1 + 2823 0.67 0.995515
Target:  5'- uUCGAAGACG-C-AGaUGCGgaggGGGUGGa -3'
miRNA:   3'- cGGCUUCUGCuGcUC-AUGCa---CCCACC- -5'
10492 5' -53.4 NC_002687.1 + 262908 0.67 0.994839
Target:  5'- gGCCGAGGAC-ACGAGaguUGUGGcGaGGa -3'
miRNA:   3'- -CGGCUUCUGcUGCUCau-GCACC-CaCC- -5'
10492 5' -53.4 NC_002687.1 + 280941 0.67 0.994083
Target:  5'- uGuuGAAGcagcguCGGCGGGgGCcUGGGUGGc -3'
miRNA:   3'- -CggCUUCu-----GCUGCUCaUGcACCCACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.