miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 3' -54.7 NC_002687.1 + 83299 0.65 0.991524
Target:  5'- cGCUGACCCAGAGCuucuacggcauccCGUCGGCUa--- -3'
miRNA:   3'- -CGGCUGGGUCUUGc------------GCGGUUGAagua -5'
10493 3' -54.7 NC_002687.1 + 149011 0.66 0.990853
Target:  5'- aCCGAUCUuGAAaugGCGCaCGACUUCGUu -3'
miRNA:   3'- cGGCUGGGuCUUg--CGCG-GUUGAAGUA- -5'
10493 3' -54.7 NC_002687.1 + 224856 0.66 0.989643
Target:  5'- cGCCGACgCGGcg-GCGCCGGCacggUCGg -3'
miRNA:   3'- -CGGCUGgGUCuugCGCGGUUGa---AGUa -5'
10493 3' -54.7 NC_002687.1 + 58123 0.67 0.981617
Target:  5'- gGgCGGCC--GAGCGCGCCGGCUguaCAa -3'
miRNA:   3'- -CgGCUGGguCUUGCGCGGUUGAa--GUa -5'
10493 3' -54.7 NC_002687.1 + 12963 0.67 0.977349
Target:  5'- aGCCGAUCaCAGAGCGcCGgCAACa---- -3'
miRNA:   3'- -CGGCUGG-GUCUUGC-GCgGUUGaagua -5'
10493 3' -54.7 NC_002687.1 + 145794 0.67 0.977117
Target:  5'- gGCCGcCUCGGAcauggacGCGCGCCuGC-UCGUg -3'
miRNA:   3'- -CGGCuGGGUCU-------UGCGCGGuUGaAGUA- -5'
10493 3' -54.7 NC_002687.1 + 297351 0.67 0.97496
Target:  5'- cGCC-ACCgAGGACGCGCgCGAUggugUCGg -3'
miRNA:   3'- -CGGcUGGgUCUUGCGCG-GUUGa---AGUa -5'
10493 3' -54.7 NC_002687.1 + 306353 0.68 0.963558
Target:  5'- aCCG-CCUGGGACGaccCGUCAACUUCGUc -3'
miRNA:   3'- cGGCuGGGUCUUGC---GCGGUUGAAGUA- -5'
10493 3' -54.7 NC_002687.1 + 319660 0.68 0.956674
Target:  5'- cGUCGAUCCAGggUGCGCU----UCAg -3'
miRNA:   3'- -CGGCUGGGUCuuGCGCGGuugaAGUa -5'
10493 3' -54.7 NC_002687.1 + 246255 0.68 0.956674
Target:  5'- cGUCGAUCCAGggUGCGCU----UCAg -3'
miRNA:   3'- -CGGCUGGGUCuuGCGCGGuugaAGUa -5'
10493 3' -54.7 NC_002687.1 + 145464 0.69 0.95292
Target:  5'- aGCUGACCCAGcgccccggcGCGCGCCucGGCgagCAg -3'
miRNA:   3'- -CGGCUGGGUCu--------UGCGCGG--UUGaa-GUa -5'
10493 3' -54.7 NC_002687.1 + 63120 0.69 0.935747
Target:  5'- uGCuCGAUgCCAGGGC-CGCUAACUUCGg -3'
miRNA:   3'- -CG-GCUG-GGUCUUGcGCGGUUGAAGUa -5'
10493 3' -54.7 NC_002687.1 + 293365 0.7 0.930905
Target:  5'- gGCCGGCagugucaucggCAGAGCGCGCgCAGCUgauuUCGUc -3'
miRNA:   3'- -CGGCUGg----------GUCUUGCGCG-GUUGA----AGUA- -5'
10493 3' -54.7 NC_002687.1 + 249199 0.7 0.90755
Target:  5'- uCCGAcgcCCCGGAccucaucgaucuacACgGCGCCGACUUCGa -3'
miRNA:   3'- cGGCU---GGGUCU--------------UG-CGCGGUUGAAGUa -5'
10493 3' -54.7 NC_002687.1 + 175688 0.71 0.890814
Target:  5'- gGgUGGCCUAGAGCGCGCCAGg----- -3'
miRNA:   3'- -CgGCUGGGUCUUGCGCGGUUgaagua -5'
10493 3' -54.7 NC_002687.1 + 105015 1.07 0.01086
Target:  5'- uGCCGACCCAGAACGCGCCAACUUCAUc -3'
miRNA:   3'- -CGGCUGGGUCUUGCGCGGUUGAAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.