Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 3' | -54.7 | NC_002687.1 | + | 105015 | 1.07 | 0.01086 |
Target: 5'- uGCCGACCCAGAACGCGCCAACUUCAUc -3' miRNA: 3'- -CGGCUGGGUCUUGCGCGGUUGAAGUA- -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 175688 | 0.71 | 0.890814 |
Target: 5'- gGgUGGCCUAGAGCGCGCCAGg----- -3' miRNA: 3'- -CgGCUGGGUCUUGCGCGGUUgaagua -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 249199 | 0.7 | 0.90755 |
Target: 5'- uCCGAcgcCCCGGAccucaucgaucuacACgGCGCCGACUUCGa -3' miRNA: 3'- cGGCU---GGGUCU--------------UG-CGCGGUUGAAGUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 293365 | 0.7 | 0.930905 |
Target: 5'- gGCCGGCagugucaucggCAGAGCGCGCgCAGCUgauuUCGUc -3' miRNA: 3'- -CGGCUGg----------GUCUUGCGCG-GUUGA----AGUA- -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 63120 | 0.69 | 0.935747 |
Target: 5'- uGCuCGAUgCCAGGGC-CGCUAACUUCGg -3' miRNA: 3'- -CG-GCUG-GGUCUUGcGCGGUUGAAGUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 145464 | 0.69 | 0.95292 |
Target: 5'- aGCUGACCCAGcgccccggcGCGCGCCucGGCgagCAg -3' miRNA: 3'- -CGGCUGGGUCu--------UGCGCGG--UUGaa-GUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 319660 | 0.68 | 0.956674 |
Target: 5'- cGUCGAUCCAGggUGCGCU----UCAg -3' miRNA: 3'- -CGGCUGGGUCuuGCGCGGuugaAGUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 246255 | 0.68 | 0.956674 |
Target: 5'- cGUCGAUCCAGggUGCGCU----UCAg -3' miRNA: 3'- -CGGCUGGGUCuuGCGCGGuugaAGUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 306353 | 0.68 | 0.963558 |
Target: 5'- aCCG-CCUGGGACGaccCGUCAACUUCGUc -3' miRNA: 3'- cGGCuGGGUCUUGC---GCGGUUGAAGUA- -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 297351 | 0.67 | 0.97496 |
Target: 5'- cGCC-ACCgAGGACGCGCgCGAUggugUCGg -3' miRNA: 3'- -CGGcUGGgUCUUGCGCG-GUUGa---AGUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 145794 | 0.67 | 0.977117 |
Target: 5'- gGCCGcCUCGGAcauggacGCGCGCCuGC-UCGUg -3' miRNA: 3'- -CGGCuGGGUCU-------UGCGCGGuUGaAGUA- -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 12963 | 0.67 | 0.977349 |
Target: 5'- aGCCGAUCaCAGAGCGcCGgCAACa---- -3' miRNA: 3'- -CGGCUGG-GUCUUGC-GCgGUUGaagua -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 58123 | 0.67 | 0.981617 |
Target: 5'- gGgCGGCC--GAGCGCGCCGGCUguaCAa -3' miRNA: 3'- -CgGCUGGguCUUGCGCGGUUGAa--GUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 224856 | 0.66 | 0.989643 |
Target: 5'- cGCCGACgCGGcg-GCGCCGGCacggUCGg -3' miRNA: 3'- -CGGCUGgGUCuugCGCGGUUGa---AGUa -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 149011 | 0.66 | 0.990853 |
Target: 5'- aCCGAUCUuGAAaugGCGCaCGACUUCGUu -3' miRNA: 3'- cGGCUGGGuCUUg--CGCG-GUUGAAGUA- -5' |
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10493 | 3' | -54.7 | NC_002687.1 | + | 83299 | 0.65 | 0.991524 |
Target: 5'- cGCUGACCCAGAGCuucuacggcauccCGUCGGCUa--- -3' miRNA: 3'- -CGGCUGGGUCUUGc------------GCGGUUGAagua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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