miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 2758 0.66 0.99985
Target:  5'- gGAUGcAGUUcACGCcaACUCCUGGGCg -3'
miRNA:   3'- gUUGCuUCGA-UGCGugUGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 148615 0.66 0.99985
Target:  5'- aGACGAgcccAGCgguaGC-CACUCCUGAc- -3'
miRNA:   3'- gUUGCU----UCGaug-CGuGUGAGGACUug -5'
10493 5' -50.1 NC_002687.1 + 21636 0.66 0.99985
Target:  5'- ---aGGAGCUGCGUAC-CUUCUGu-- -3'
miRNA:   3'- guugCUUCGAUGCGUGuGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 271198 0.66 0.999809
Target:  5'- -cACG-GGCgcCGCGCACUCUUGGc- -3'
miRNA:   3'- guUGCuUCGauGCGUGUGAGGACUug -5'
10493 5' -50.1 NC_002687.1 + 88828 0.66 0.999809
Target:  5'- --cCGcGGCUGCGgACACacggUCCUGGAa -3'
miRNA:   3'- guuGCuUCGAUGCgUGUG----AGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 157124 0.66 0.999809
Target:  5'- gCGGCGAAGCUGCaGacaAUugUCCgGAGa -3'
miRNA:   3'- -GUUGCUUCGAUG-Cg--UGugAGGaCUUg -5'
10493 5' -50.1 NC_002687.1 + 284667 0.66 0.999809
Target:  5'- -uGCGGAGCUcCGcCACACUUguugcaUGAGCu -3'
miRNA:   3'- guUGCUUCGAuGC-GUGUGAGg-----ACUUG- -5'
10493 5' -50.1 NC_002687.1 + 115248 0.66 0.999759
Target:  5'- aAACGAAGCUGCGCGucgucaACUUUcGAAa -3'
miRNA:   3'- gUUGCUUCGAUGCGUg-----UGAGGaCUUg -5'
10493 5' -50.1 NC_002687.1 + 37481 0.66 0.999759
Target:  5'- -cGCGAugAGCUGUGCAUACUCCa---- -3'
miRNA:   3'- guUGCU--UCGAUGCGUGUGAGGacuug -5'
10493 5' -50.1 NC_002687.1 + 69991 0.66 0.999759
Target:  5'- aCAACGAAGaCUguuGCGCGCACgucuUCCguuGCu -3'
miRNA:   3'- -GUUGCUUC-GA---UGCGUGUG----AGGacuUG- -5'
10493 5' -50.1 NC_002687.1 + 284748 0.66 0.999697
Target:  5'- ---gGAAGCUgucgAUGCAC-CUgCUGAACg -3'
miRNA:   3'- guugCUUCGA----UGCGUGuGAgGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 277152 0.67 0.999622
Target:  5'- cCGACGAGGCaGCGCGCgggGCUUUUGc-- -3'
miRNA:   3'- -GUUGCUUCGaUGCGUG---UGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 305767 0.67 0.999622
Target:  5'- gGGCGAAaaaCUGCgGC-CGCUCCUGAcaGCg -3'
miRNA:   3'- gUUGCUUc--GAUG-CGuGUGAGGACU--UG- -5'
10493 5' -50.1 NC_002687.1 + 273868 0.67 0.999531
Target:  5'- aAAgGAAGCUACG-AUACgUCCgGAGCu -3'
miRNA:   3'- gUUgCUUCGAUGCgUGUG-AGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 126491 0.67 0.999531
Target:  5'- ---aGAAGCUugGCgugGCUCCUuucGAACa -3'
miRNA:   3'- guugCUUCGAugCGug-UGAGGA---CUUG- -5'
10493 5' -50.1 NC_002687.1 + 201850 0.67 0.9995
Target:  5'- cCAGCGGcggcuuggcacaguGGCUcACGCGCGCUCgggcgGGGCa -3'
miRNA:   3'- -GUUGCU--------------UCGA-UGCGUGUGAGga---CUUG- -5'
10493 5' -50.1 NC_002687.1 + 31848 0.67 0.999422
Target:  5'- aGACcaaauGCUGCGCGgcUACUCCcUGAACu -3'
miRNA:   3'- gUUGcuu--CGAUGCGU--GUGAGG-ACUUG- -5'
10493 5' -50.1 NC_002687.1 + 248497 0.67 0.999385
Target:  5'- uGACGucacaccgucauucAGGaCaACGCGCAcCUCCUGGACg -3'
miRNA:   3'- gUUGC--------------UUC-GaUGCGUGU-GAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 217557 0.67 0.999135
Target:  5'- -cGCGGAGCccGCGUACcCUCCUGu-- -3'
miRNA:   3'- guUGCUUCGa-UGCGUGuGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 332507 0.68 0.999028
Target:  5'- gGACGGugauccacccuuugcGGCUGCaGCACAC-CCUGGc- -3'
miRNA:   3'- gUUGCU---------------UCGAUG-CGUGUGaGGACUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.