Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 308482 | 0.69 | 0.996944 |
Target: 5'- gGGCaGAGCUACGCggcuuccACACUaCCgUGAACa -3' miRNA: 3'- gUUGcUUCGAUGCG-------UGUGA-GG-ACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 44714 | 0.69 | 0.995884 |
Target: 5'- uCGACgGAGGCcgGCGCAgACggagacCCUGAACc -3' miRNA: 3'- -GUUG-CUUCGa-UGCGUgUGa-----GGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 36175 | 0.69 | 0.996992 |
Target: 5'- uGACGGAGagggGCGCGCACUCggaUGuACg -3' miRNA: 3'- gUUGCUUCga--UGCGUGUGAGg--ACuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 10568 | 0.69 | 0.997446 |
Target: 5'- gGACGAAGaaACGCACacgguGCUCUUGGGg -3' miRNA: 3'- gUUGCUUCgaUGCGUG-----UGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 332507 | 0.68 | 0.999028 |
Target: 5'- gGACGGugauccacccuuugcGGCUGCaGCACAC-CCUGGc- -3' miRNA: 3'- gUUGCU---------------UCGAUG-CGUGUGaGGACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 67555 | 0.68 | 0.99895 |
Target: 5'- aCAACc-AGCUACGCAUGCUUCgGAGu -3' miRNA: 3'- -GUUGcuUCGAUGCGUGUGAGGaCUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 308432 | 0.68 | 0.998184 |
Target: 5'- cCGGCGggGCggGCGCGCcccCUCCcggUGAGa -3' miRNA: 3'- -GUUGCuuCGa-UGCGUGu--GAGG---ACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 202664 | 0.68 | 0.998184 |
Target: 5'- cCAACGGAGUcACGUggACGCUugaCUUGGACa -3' miRNA: 3'- -GUUGCUUCGaUGCG--UGUGA---GGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 51121 | 0.68 | 0.99871 |
Target: 5'- -cACGAuuuagugAGCUACGCACACUgUUGuccccACa -3' miRNA: 3'- guUGCU-------UCGAUGCGUGUGAgGACu----UG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 52067 | 0.68 | 0.99871 |
Target: 5'- -cACGAuuuagugAGCUACGCACACUgUUGu-- -3' miRNA: 3'- guUGCU-------UCGAUGCGUGUGAgGACuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 88490 | 0.68 | 0.99895 |
Target: 5'- gCGGCGAAGCUACGUcgaaguauuGCACagacaUCCgacgaGGGCa -3' miRNA: 3'- -GUUGCUUCGAUGCG---------UGUG-----AGGa----CUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 91227 | 0.68 | 0.99895 |
Target: 5'- cCGGCGccaguacGCUugGCACcgaucauaaggGCUCCUGAAa -3' miRNA: 3'- -GUUGCuu-----CGAugCGUG-----------UGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 31848 | 0.67 | 0.999422 |
Target: 5'- aGACcaaauGCUGCGCGgcUACUCCcUGAACu -3' miRNA: 3'- gUUGcuu--CGAUGCGU--GUGAGG-ACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 217557 | 0.67 | 0.999135 |
Target: 5'- -cGCGGAGCccGCGUACcCUCCUGu-- -3' miRNA: 3'- guUGCUUCGa-UGCGUGuGAGGACuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 273868 | 0.67 | 0.999531 |
Target: 5'- aAAgGAAGCUACG-AUACgUCCgGAGCu -3' miRNA: 3'- gUUgCUUCGAUGCgUGUG-AGGaCUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 126491 | 0.67 | 0.999531 |
Target: 5'- ---aGAAGCUugGCgugGCUCCUuucGAACa -3' miRNA: 3'- guugCUUCGAugCGug-UGAGGA---CUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 277152 | 0.67 | 0.999622 |
Target: 5'- cCGACGAGGCaGCGCGCgggGCUUUUGc-- -3' miRNA: 3'- -GUUGCUUCGaUGCGUG---UGAGGACuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 305767 | 0.67 | 0.999622 |
Target: 5'- gGGCGAAaaaCUGCgGC-CGCUCCUGAcaGCg -3' miRNA: 3'- gUUGCUUc--GAUG-CGuGUGAGGACU--UG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 201850 | 0.67 | 0.9995 |
Target: 5'- cCAGCGGcggcuuggcacaguGGCUcACGCGCGCUCgggcgGGGCa -3' miRNA: 3'- -GUUGCU--------------UCGA-UGCGUGUGAGga---CUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 248497 | 0.67 | 0.999385 |
Target: 5'- uGACGucacaccgucauucAGGaCaACGCGCAcCUCCUGGACg -3' miRNA: 3'- gUUGC--------------UUC-GaUGCGUGU-GAGGACUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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