miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 105049 1.11 0.016433
Target:  5'- gCAACGAAGCUACGCACACUCCUGAACg -3'
miRNA:   3'- -GUUGCUUCGAUGCGUGUGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 292987 0.77 0.85999
Target:  5'- aGACGAaaucAGCUGCGCGCGCUCUgccGAugACa -3'
miRNA:   3'- gUUGCU----UCGAUGCGUGUGAGGa--CU--UG- -5'
10493 5' -50.1 NC_002687.1 + 178788 0.74 0.944544
Target:  5'- -cACGAAGCcgagcugUACGCAUACUUgCUGAGCu -3'
miRNA:   3'- guUGCUUCG-------AUGCGUGUGAG-GACUUG- -5'
10493 5' -50.1 NC_002687.1 + 253335 0.72 0.970474
Target:  5'- uCGGCGAAGCUGuCGCugAaacaaUCCgGGACg -3'
miRNA:   3'- -GUUGCUUCGAU-GCGugUg----AGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 7078 0.72 0.975854
Target:  5'- aGACGGcuuCUAUGCACACUCCUuGAAg -3'
miRNA:   3'- gUUGCUuc-GAUGCGUGUGAGGA-CUUg -5'
10493 5' -50.1 NC_002687.1 + 150639 0.72 0.975854
Target:  5'- aGACGGuGGCUACGUugACUCCcauuugccGAGCa -3'
miRNA:   3'- gUUGCU-UCGAUGCGugUGAGGa-------CUUG- -5'
10493 5' -50.1 NC_002687.1 + 26205 0.72 0.975854
Target:  5'- cCAACGAAGC-ACGgACACagCUGAAg -3'
miRNA:   3'- -GUUGCUUCGaUGCgUGUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 268247 0.71 0.984409
Target:  5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3'
miRNA:   3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 270269 0.71 0.984409
Target:  5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3'
miRNA:   3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 225869 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226241 0.71 0.989139
Target:  5'- gGACGAacagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226427 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226055 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 248869 0.7 0.991611
Target:  5'- ---aGGAGgUGCGCGUugUCCUGAAUg -3'
miRNA:   3'- guugCUUCgAUGCGUGugAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 309739 0.7 0.992668
Target:  5'- cCGAUG-AGCUcgaGCGUACACUCCaGggUa -3'
miRNA:   3'- -GUUGCuUCGA---UGCGUGUGAGGaCuuG- -5'
10493 5' -50.1 NC_002687.1 + 46111 0.7 0.993616
Target:  5'- uCGACGAAGCguauacaaUGCGCacuaGCugUCCaGAGCu -3'
miRNA:   3'- -GUUGCUUCG--------AUGCG----UGugAGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 200514 0.7 0.994462
Target:  5'- aCAGgGAAGUgguCGaCAUGCUCCUGAAg -3'
miRNA:   3'- -GUUgCUUCGau-GC-GUGUGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 69804 0.7 0.994462
Target:  5'- aAGCGGAGC-ACGCGCugUCUgucUGAu- -3'
miRNA:   3'- gUUGCUUCGaUGCGUGugAGG---ACUug -5'
10493 5' -50.1 NC_002687.1 + 323823 0.69 0.995216
Target:  5'- gAGCGAAGa-ACGCACACUCgaGuACc -3'
miRNA:   3'- gUUGCUUCgaUGCGUGUGAGgaCuUG- -5'
10493 5' -50.1 NC_002687.1 + 129407 0.69 0.995821
Target:  5'- uCAACGAAGCUAUcuauuguGCACAUcacgCCcggGAACg -3'
miRNA:   3'- -GUUGCUUCGAUG-------CGUGUGa---GGa--CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.