miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 44714 0.69 0.995884
Target:  5'- uCGACgGAGGCcgGCGCAgACggagacCCUGAACc -3'
miRNA:   3'- -GUUG-CUUCGa-UGCGUgUGa-----GGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 308482 0.69 0.996944
Target:  5'- gGGCaGAGCUACGCggcuuccACACUaCCgUGAACa -3'
miRNA:   3'- gUUGcUUCGAUGCG-------UGUGA-GG-ACUUG- -5'
10493 5' -50.1 NC_002687.1 + 36175 0.69 0.996992
Target:  5'- uGACGGAGagggGCGCGCACUCggaUGuACg -3'
miRNA:   3'- gUUGCUUCga--UGCGUGUGAGg--ACuUG- -5'
10493 5' -50.1 NC_002687.1 + 10568 0.69 0.997446
Target:  5'- gGACGAAGaaACGCACacgguGCUCUUGGGg -3'
miRNA:   3'- gUUGCUUCgaUGCGUG-----UGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 202664 0.68 0.998184
Target:  5'- cCAACGGAGUcACGUggACGCUugaCUUGGACa -3'
miRNA:   3'- -GUUGCUUCGaUGCG--UGUGA---GGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 308432 0.68 0.998184
Target:  5'- cCGGCGggGCggGCGCGCcccCUCCcggUGAGa -3'
miRNA:   3'- -GUUGCuuCGa-UGCGUGu--GAGG---ACUUg -5'
10493 5' -50.1 NC_002687.1 + 52067 0.68 0.99871
Target:  5'- -cACGAuuuagugAGCUACGCACACUgUUGu-- -3'
miRNA:   3'- guUGCU-------UCGAUGCGUGUGAgGACuug -5'
10493 5' -50.1 NC_002687.1 + 51121 0.68 0.99871
Target:  5'- -cACGAuuuagugAGCUACGCACACUgUUGuccccACa -3'
miRNA:   3'- guUGCU-------UCGAUGCGUGUGAgGACu----UG- -5'
10493 5' -50.1 NC_002687.1 + 67555 0.68 0.99895
Target:  5'- aCAACc-AGCUACGCAUGCUUCgGAGu -3'
miRNA:   3'- -GUUGcuUCGAUGCGUGUGAGGaCUUg -5'
10493 5' -50.1 NC_002687.1 + 88490 0.68 0.99895
Target:  5'- gCGGCGAAGCUACGUcgaaguauuGCACagacaUCCgacgaGGGCa -3'
miRNA:   3'- -GUUGCUUCGAUGCG---------UGUG-----AGGa----CUUG- -5'
10493 5' -50.1 NC_002687.1 + 91227 0.68 0.99895
Target:  5'- cCGGCGccaguacGCUugGCACcgaucauaaggGCUCCUGAAa -3'
miRNA:   3'- -GUUGCuu-----CGAugCGUG-----------UGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 332507 0.68 0.999028
Target:  5'- gGACGGugauccacccuuugcGGCUGCaGCACAC-CCUGGc- -3'
miRNA:   3'- gUUGCU---------------UCGAUG-CGUGUGaGGACUug -5'
10493 5' -50.1 NC_002687.1 + 217557 0.67 0.999135
Target:  5'- -cGCGGAGCccGCGUACcCUCCUGu-- -3'
miRNA:   3'- guUGCUUCGa-UGCGUGuGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 248497 0.67 0.999385
Target:  5'- uGACGucacaccgucauucAGGaCaACGCGCAcCUCCUGGACg -3'
miRNA:   3'- gUUGC--------------UUC-GaUGCGUGU-GAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 31848 0.67 0.999422
Target:  5'- aGACcaaauGCUGCGCGgcUACUCCcUGAACu -3'
miRNA:   3'- gUUGcuu--CGAUGCGU--GUGAGG-ACUUG- -5'
10493 5' -50.1 NC_002687.1 + 201850 0.67 0.9995
Target:  5'- cCAGCGGcggcuuggcacaguGGCUcACGCGCGCUCgggcgGGGCa -3'
miRNA:   3'- -GUUGCU--------------UCGA-UGCGUGUGAGga---CUUG- -5'
10493 5' -50.1 NC_002687.1 + 126491 0.67 0.999531
Target:  5'- ---aGAAGCUugGCgugGCUCCUuucGAACa -3'
miRNA:   3'- guugCUUCGAugCGug-UGAGGA---CUUG- -5'
10493 5' -50.1 NC_002687.1 + 273868 0.67 0.999531
Target:  5'- aAAgGAAGCUACG-AUACgUCCgGAGCu -3'
miRNA:   3'- gUUgCUUCGAUGCgUGUG-AGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 305767 0.67 0.999622
Target:  5'- gGGCGAAaaaCUGCgGC-CGCUCCUGAcaGCg -3'
miRNA:   3'- gUUGCUUc--GAUG-CGuGUGAGGACU--UG- -5'
10493 5' -50.1 NC_002687.1 + 277152 0.67 0.999622
Target:  5'- cCGACGAGGCaGCGCGCgggGCUUUUGc-- -3'
miRNA:   3'- -GUUGCUUCGaUGCGUG---UGAGGACuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.