Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 284748 | 0.66 | 0.999697 |
Target: 5'- ---gGAAGCUgucgAUGCAC-CUgCUGAACg -3' miRNA: 3'- guugCUUCGA----UGCGUGuGAgGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 37481 | 0.66 | 0.999759 |
Target: 5'- -cGCGAugAGCUGUGCAUACUCCa---- -3' miRNA: 3'- guUGCU--UCGAUGCGUGUGAGGacuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 115248 | 0.66 | 0.999759 |
Target: 5'- aAACGAAGCUGCGCGucgucaACUUUcGAAa -3' miRNA: 3'- gUUGCUUCGAUGCGUg-----UGAGGaCUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 69991 | 0.66 | 0.999759 |
Target: 5'- aCAACGAAGaCUguuGCGCGCACgucuUCCguuGCu -3' miRNA: 3'- -GUUGCUUC-GA---UGCGUGUG----AGGacuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 284667 | 0.66 | 0.999809 |
Target: 5'- -uGCGGAGCUcCGcCACACUUguugcaUGAGCu -3' miRNA: 3'- guUGCUUCGAuGC-GUGUGAGg-----ACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 271198 | 0.66 | 0.999809 |
Target: 5'- -cACG-GGCgcCGCGCACUCUUGGc- -3' miRNA: 3'- guUGCuUCGauGCGUGUGAGGACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 88828 | 0.66 | 0.999809 |
Target: 5'- --cCGcGGCUGCGgACACacggUCCUGGAa -3' miRNA: 3'- guuGCuUCGAUGCgUGUG----AGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 157124 | 0.66 | 0.999809 |
Target: 5'- gCGGCGAAGCUGCaGacaAUugUCCgGAGa -3' miRNA: 3'- -GUUGCUUCGAUG-Cg--UGugAGGaCUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 148615 | 0.66 | 0.99985 |
Target: 5'- aGACGAgcccAGCgguaGC-CACUCCUGAc- -3' miRNA: 3'- gUUGCU----UCGaug-CGuGUGAGGACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 2758 | 0.66 | 0.99985 |
Target: 5'- gGAUGcAGUUcACGCcaACUCCUGGGCg -3' miRNA: 3'- gUUGCuUCGA-UGCGugUGAGGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 21636 | 0.66 | 0.99985 |
Target: 5'- ---aGGAGCUGCGUAC-CUUCUGu-- -3' miRNA: 3'- guugCUUCGAUGCGUGuGAGGACuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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