Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 67555 | 0.68 | 0.99895 |
Target: 5'- aCAACc-AGCUACGCAUGCUUCgGAGu -3' miRNA: 3'- -GUUGcuUCGAUGCGUGUGAGGaCUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 91227 | 0.68 | 0.99895 |
Target: 5'- cCGGCGccaguacGCUugGCACcgaucauaaggGCUCCUGAAa -3' miRNA: 3'- -GUUGCuu-----CGAugCGUG-----------UGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 88490 | 0.68 | 0.99895 |
Target: 5'- gCGGCGAAGCUACGUcgaaguauuGCACagacaUCCgacgaGGGCa -3' miRNA: 3'- -GUUGCUUCGAUGCG---------UGUG-----AGGa----CUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 51121 | 0.68 | 0.99871 |
Target: 5'- -cACGAuuuagugAGCUACGCACACUgUUGuccccACa -3' miRNA: 3'- guUGCU-------UCGAUGCGUGUGAgGACu----UG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 52067 | 0.68 | 0.99871 |
Target: 5'- -cACGAuuuagugAGCUACGCACACUgUUGu-- -3' miRNA: 3'- guUGCU-------UCGAUGCGUGUGAgGACuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 308432 | 0.68 | 0.998184 |
Target: 5'- cCGGCGggGCggGCGCGCcccCUCCcggUGAGa -3' miRNA: 3'- -GUUGCuuCGa-UGCGUGu--GAGG---ACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 202664 | 0.68 | 0.998184 |
Target: 5'- cCAACGGAGUcACGUggACGCUugaCUUGGACa -3' miRNA: 3'- -GUUGCUUCGaUGCG--UGUGA---GGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 10568 | 0.69 | 0.997446 |
Target: 5'- gGACGAAGaaACGCACacgguGCUCUUGGGg -3' miRNA: 3'- gUUGCUUCgaUGCGUG-----UGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 36175 | 0.69 | 0.996992 |
Target: 5'- uGACGGAGagggGCGCGCACUCggaUGuACg -3' miRNA: 3'- gUUGCUUCga--UGCGUGUGAGg--ACuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 308482 | 0.69 | 0.996944 |
Target: 5'- gGGCaGAGCUACGCggcuuccACACUaCCgUGAACa -3' miRNA: 3'- gUUGcUUCGAUGCG-------UGUGA-GG-ACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 44714 | 0.69 | 0.995884 |
Target: 5'- uCGACgGAGGCcgGCGCAgACggagacCCUGAACc -3' miRNA: 3'- -GUUG-CUUCGa-UGCGUgUGa-----GGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 129407 | 0.69 | 0.995821 |
Target: 5'- uCAACGAAGCUAUcuauuguGCACAUcacgCCcggGAACg -3' miRNA: 3'- -GUUGCUUCGAUG-------CGUGUGa---GGa--CUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 323823 | 0.69 | 0.995216 |
Target: 5'- gAGCGAAGa-ACGCACACUCgaGuACc -3' miRNA: 3'- gUUGCUUCgaUGCGUGUGAGgaCuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 200514 | 0.7 | 0.994462 |
Target: 5'- aCAGgGAAGUgguCGaCAUGCUCCUGAAg -3' miRNA: 3'- -GUUgCUUCGau-GC-GUGUGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 69804 | 0.7 | 0.994462 |
Target: 5'- aAGCGGAGC-ACGCGCugUCUgucUGAu- -3' miRNA: 3'- gUUGCUUCGaUGCGUGugAGG---ACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 46111 | 0.7 | 0.993616 |
Target: 5'- uCGACGAAGCguauacaaUGCGCacuaGCugUCCaGAGCu -3' miRNA: 3'- -GUUGCUUCG--------AUGCG----UGugAGGaCUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 309739 | 0.7 | 0.992668 |
Target: 5'- cCGAUG-AGCUcgaGCGUACACUCCaGggUa -3' miRNA: 3'- -GUUGCuUCGA---UGCGUGUGAGGaCuuG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 248869 | 0.7 | 0.991611 |
Target: 5'- ---aGGAGgUGCGCGUugUCCUGAAUg -3' miRNA: 3'- guugCUUCgAUGCGUGugAGGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 226427 | 0.71 | 0.989139 |
Target: 5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3' miRNA: 3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 225869 | 0.71 | 0.989139 |
Target: 5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3' miRNA: 3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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