miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 2758 0.66 0.99985
Target:  5'- gGAUGcAGUUcACGCcaACUCCUGGGCg -3'
miRNA:   3'- gUUGCuUCGA-UGCGugUGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 7078 0.72 0.975854
Target:  5'- aGACGGcuuCUAUGCACACUCCUuGAAg -3'
miRNA:   3'- gUUGCUuc-GAUGCGUGUGAGGA-CUUg -5'
10493 5' -50.1 NC_002687.1 + 10568 0.69 0.997446
Target:  5'- gGACGAAGaaACGCACacgguGCUCUUGGGg -3'
miRNA:   3'- gUUGCUUCgaUGCGUG-----UGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 21636 0.66 0.99985
Target:  5'- ---aGGAGCUGCGUAC-CUUCUGu-- -3'
miRNA:   3'- guugCUUCGAUGCGUGuGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 26205 0.72 0.975854
Target:  5'- cCAACGAAGC-ACGgACACagCUGAAg -3'
miRNA:   3'- -GUUGCUUCGaUGCgUGUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 31848 0.67 0.999422
Target:  5'- aGACcaaauGCUGCGCGgcUACUCCcUGAACu -3'
miRNA:   3'- gUUGcuu--CGAUGCGU--GUGAGG-ACUUG- -5'
10493 5' -50.1 NC_002687.1 + 36175 0.69 0.996992
Target:  5'- uGACGGAGagggGCGCGCACUCggaUGuACg -3'
miRNA:   3'- gUUGCUUCga--UGCGUGUGAGg--ACuUG- -5'
10493 5' -50.1 NC_002687.1 + 37481 0.66 0.999759
Target:  5'- -cGCGAugAGCUGUGCAUACUCCa---- -3'
miRNA:   3'- guUGCU--UCGAUGCGUGUGAGGacuug -5'
10493 5' -50.1 NC_002687.1 + 44714 0.69 0.995884
Target:  5'- uCGACgGAGGCcgGCGCAgACggagacCCUGAACc -3'
miRNA:   3'- -GUUG-CUUCGa-UGCGUgUGa-----GGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 46111 0.7 0.993616
Target:  5'- uCGACGAAGCguauacaaUGCGCacuaGCugUCCaGAGCu -3'
miRNA:   3'- -GUUGCUUCG--------AUGCG----UGugAGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 51121 0.68 0.99871
Target:  5'- -cACGAuuuagugAGCUACGCACACUgUUGuccccACa -3'
miRNA:   3'- guUGCU-------UCGAUGCGUGUGAgGACu----UG- -5'
10493 5' -50.1 NC_002687.1 + 52067 0.68 0.99871
Target:  5'- -cACGAuuuagugAGCUACGCACACUgUUGu-- -3'
miRNA:   3'- guUGCU-------UCGAUGCGUGUGAgGACuug -5'
10493 5' -50.1 NC_002687.1 + 67555 0.68 0.99895
Target:  5'- aCAACc-AGCUACGCAUGCUUCgGAGu -3'
miRNA:   3'- -GUUGcuUCGAUGCGUGUGAGGaCUUg -5'
10493 5' -50.1 NC_002687.1 + 69804 0.7 0.994462
Target:  5'- aAGCGGAGC-ACGCGCugUCUgucUGAu- -3'
miRNA:   3'- gUUGCUUCGaUGCGUGugAGG---ACUug -5'
10493 5' -50.1 NC_002687.1 + 69991 0.66 0.999759
Target:  5'- aCAACGAAGaCUguuGCGCGCACgucuUCCguuGCu -3'
miRNA:   3'- -GUUGCUUC-GA---UGCGUGUG----AGGacuUG- -5'
10493 5' -50.1 NC_002687.1 + 88490 0.68 0.99895
Target:  5'- gCGGCGAAGCUACGUcgaaguauuGCACagacaUCCgacgaGGGCa -3'
miRNA:   3'- -GUUGCUUCGAUGCG---------UGUG-----AGGa----CUUG- -5'
10493 5' -50.1 NC_002687.1 + 88828 0.66 0.999809
Target:  5'- --cCGcGGCUGCGgACACacggUCCUGGAa -3'
miRNA:   3'- guuGCuUCGAUGCgUGUG----AGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 91227 0.68 0.99895
Target:  5'- cCGGCGccaguacGCUugGCACcgaucauaaggGCUCCUGAAa -3'
miRNA:   3'- -GUUGCuu-----CGAugCGUG-----------UGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 105049 1.11 0.016433
Target:  5'- gCAACGAAGCUACGCACACUCCUGAACg -3'
miRNA:   3'- -GUUGCUUCGAUGCGUGUGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 115248 0.66 0.999759
Target:  5'- aAACGAAGCUGCGCGucgucaACUUUcGAAa -3'
miRNA:   3'- gUUGCUUCGAUGCGUg-----UGAGGaCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.