miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 126491 0.67 0.999531
Target:  5'- ---aGAAGCUugGCgugGCUCCUuucGAACa -3'
miRNA:   3'- guugCUUCGAugCGug-UGAGGA---CUUG- -5'
10493 5' -50.1 NC_002687.1 + 129407 0.69 0.995821
Target:  5'- uCAACGAAGCUAUcuauuguGCACAUcacgCCcggGAACg -3'
miRNA:   3'- -GUUGCUUCGAUG-------CGUGUGa---GGa--CUUG- -5'
10493 5' -50.1 NC_002687.1 + 148615 0.66 0.99985
Target:  5'- aGACGAgcccAGCgguaGC-CACUCCUGAc- -3'
miRNA:   3'- gUUGCU----UCGaug-CGuGUGAGGACUug -5'
10493 5' -50.1 NC_002687.1 + 150639 0.72 0.975854
Target:  5'- aGACGGuGGCUACGUugACUCCcauuugccGAGCa -3'
miRNA:   3'- gUUGCU-UCGAUGCGugUGAGGa-------CUUG- -5'
10493 5' -50.1 NC_002687.1 + 157124 0.66 0.999809
Target:  5'- gCGGCGAAGCUGCaGacaAUugUCCgGAGa -3'
miRNA:   3'- -GUUGCUUCGAUG-Cg--UGugAGGaCUUg -5'
10493 5' -50.1 NC_002687.1 + 178788 0.74 0.944544
Target:  5'- -cACGAAGCcgagcugUACGCAUACUUgCUGAGCu -3'
miRNA:   3'- guUGCUUCG-------AUGCGUGUGAG-GACUUG- -5'
10493 5' -50.1 NC_002687.1 + 200514 0.7 0.994462
Target:  5'- aCAGgGAAGUgguCGaCAUGCUCCUGAAg -3'
miRNA:   3'- -GUUgCUUCGau-GC-GUGUGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 201850 0.67 0.9995
Target:  5'- cCAGCGGcggcuuggcacaguGGCUcACGCGCGCUCgggcgGGGCa -3'
miRNA:   3'- -GUUGCU--------------UCGA-UGCGUGUGAGga---CUUG- -5'
10493 5' -50.1 NC_002687.1 + 202664 0.68 0.998184
Target:  5'- cCAACGGAGUcACGUggACGCUugaCUUGGACa -3'
miRNA:   3'- -GUUGCUUCGaUGCG--UGUGA---GGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 217557 0.67 0.999135
Target:  5'- -cGCGGAGCccGCGUACcCUCCUGu-- -3'
miRNA:   3'- guUGCUUCGa-UGCGUGuGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 225869 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226055 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226241 0.71 0.989139
Target:  5'- gGACGAacagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226427 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 248497 0.67 0.999385
Target:  5'- uGACGucacaccgucauucAGGaCaACGCGCAcCUCCUGGACg -3'
miRNA:   3'- gUUGC--------------UUC-GaUGCGUGU-GAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 248869 0.7 0.991611
Target:  5'- ---aGGAGgUGCGCGUugUCCUGAAUg -3'
miRNA:   3'- guugCUUCgAUGCGUGugAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 253335 0.72 0.970474
Target:  5'- uCGGCGAAGCUGuCGCugAaacaaUCCgGGACg -3'
miRNA:   3'- -GUUGCUUCGAU-GCGugUg----AGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 268247 0.71 0.984409
Target:  5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3'
miRNA:   3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 270269 0.71 0.984409
Target:  5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3'
miRNA:   3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 271198 0.66 0.999809
Target:  5'- -cACG-GGCgcCGCGCACUCUUGGc- -3'
miRNA:   3'- guUGCuUCGauGCGUGUGAGGACUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.