Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 273868 | 0.67 | 0.999531 |
Target: 5'- aAAgGAAGCUACG-AUACgUCCgGAGCu -3' miRNA: 3'- gUUgCUUCGAUGCgUGUG-AGGaCUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 277152 | 0.67 | 0.999622 |
Target: 5'- cCGACGAGGCaGCGCGCgggGCUUUUGc-- -3' miRNA: 3'- -GUUGCUUCGaUGCGUG---UGAGGACuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 284667 | 0.66 | 0.999809 |
Target: 5'- -uGCGGAGCUcCGcCACACUUguugcaUGAGCu -3' miRNA: 3'- guUGCUUCGAuGC-GUGUGAGg-----ACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 284748 | 0.66 | 0.999697 |
Target: 5'- ---gGAAGCUgucgAUGCAC-CUgCUGAACg -3' miRNA: 3'- guugCUUCGA----UGCGUGuGAgGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 292987 | 0.77 | 0.85999 |
Target: 5'- aGACGAaaucAGCUGCGCGCGCUCUgccGAugACa -3' miRNA: 3'- gUUGCU----UCGAUGCGUGUGAGGa--CU--UG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 305767 | 0.67 | 0.999622 |
Target: 5'- gGGCGAAaaaCUGCgGC-CGCUCCUGAcaGCg -3' miRNA: 3'- gUUGCUUc--GAUG-CGuGUGAGGACU--UG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 308432 | 0.68 | 0.998184 |
Target: 5'- cCGGCGggGCggGCGCGCcccCUCCcggUGAGa -3' miRNA: 3'- -GUUGCuuCGa-UGCGUGu--GAGG---ACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 308482 | 0.69 | 0.996944 |
Target: 5'- gGGCaGAGCUACGCggcuuccACACUaCCgUGAACa -3' miRNA: 3'- gUUGcUUCGAUGCG-------UGUGA-GG-ACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 309739 | 0.7 | 0.992668 |
Target: 5'- cCGAUG-AGCUcgaGCGUACACUCCaGggUa -3' miRNA: 3'- -GUUGCuUCGA---UGCGUGUGAGGaCuuG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 323823 | 0.69 | 0.995216 |
Target: 5'- gAGCGAAGa-ACGCACACUCgaGuACc -3' miRNA: 3'- gUUGCUUCgaUGCGUGUGAGgaCuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 332507 | 0.68 | 0.999028 |
Target: 5'- gGACGGugauccacccuuugcGGCUGCaGCACAC-CCUGGc- -3' miRNA: 3'- gUUGCU---------------UCGAUG-CGUGUGaGGACUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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