miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 105049 1.11 0.016433
Target:  5'- gCAACGAAGCUACGCACACUCCUGAACg -3'
miRNA:   3'- -GUUGCUUCGAUGCGUGUGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 88490 0.68 0.99895
Target:  5'- gCGGCGAAGCUACGUcgaaguauuGCACagacaUCCgacgaGGGCa -3'
miRNA:   3'- -GUUGCUUCGAUGCG---------UGUG-----AGGa----CUUG- -5'
10493 5' -50.1 NC_002687.1 + 332507 0.68 0.999028
Target:  5'- gGACGGugauccacccuuugcGGCUGCaGCACAC-CCUGGc- -3'
miRNA:   3'- gUUGCU---------------UCGAUG-CGUGUGaGGACUug -5'
10493 5' -50.1 NC_002687.1 + 21636 0.66 0.99985
Target:  5'- ---aGGAGCUGCGUAC-CUUCUGu-- -3'
miRNA:   3'- guugCUUCGAUGCGUGuGAGGACuug -5'
10493 5' -50.1 NC_002687.1 + 26205 0.72 0.975854
Target:  5'- cCAACGAAGC-ACGgACACagCUGAAg -3'
miRNA:   3'- -GUUGCUUCGaUGCgUGUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 270269 0.71 0.984409
Target:  5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3'
miRNA:   3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 226055 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226241 0.71 0.989139
Target:  5'- gGACGAacagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 129407 0.69 0.995821
Target:  5'- uCAACGAAGCUAUcuauuguGCACAUcacgCCcggGAACg -3'
miRNA:   3'- -GUUGCUUCGAUG-------CGUGUGa---GGa--CUUG- -5'
10493 5' -50.1 NC_002687.1 + 52067 0.68 0.99871
Target:  5'- -cACGAuuuagugAGCUACGCACACUgUUGu-- -3'
miRNA:   3'- guUGCU-------UCGAUGCGUGUGAgGACuug -5'
10493 5' -50.1 NC_002687.1 + 308432 0.68 0.998184
Target:  5'- cCGGCGggGCggGCGCGCcccCUCCcggUGAGa -3'
miRNA:   3'- -GUUGCuuCGa-UGCGUGu--GAGG---ACUUg -5'
10493 5' -50.1 NC_002687.1 + 200514 0.7 0.994462
Target:  5'- aCAGgGAAGUgguCGaCAUGCUCCUGAAg -3'
miRNA:   3'- -GUUgCUUCGau-GC-GUGUGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 292987 0.77 0.85999
Target:  5'- aGACGAaaucAGCUGCGCGCGCUCUgccGAugACa -3'
miRNA:   3'- gUUGCU----UCGAUGCGUGUGAGGa--CU--UG- -5'
10493 5' -50.1 NC_002687.1 + 202664 0.68 0.998184
Target:  5'- cCAACGGAGUcACGUggACGCUugaCUUGGACa -3'
miRNA:   3'- -GUUGCUUCGaUGCG--UGUGA---GGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 253335 0.72 0.970474
Target:  5'- uCGGCGAAGCUGuCGCugAaacaaUCCgGGACg -3'
miRNA:   3'- -GUUGCUUCGAU-GCGugUg----AGGaCUUG- -5'
10493 5' -50.1 NC_002687.1 + 226427 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 51121 0.68 0.99871
Target:  5'- -cACGAuuuagugAGCUACGCACACUgUUGuccccACa -3'
miRNA:   3'- guUGCU-------UCGAUGCGUGUGAgGACu----UG- -5'
10493 5' -50.1 NC_002687.1 + 67555 0.68 0.99895
Target:  5'- aCAACc-AGCUACGCAUGCUUCgGAGu -3'
miRNA:   3'- -GUUGcuUCGAUGCGUGUGAGGaCUUg -5'
10493 5' -50.1 NC_002687.1 + 150639 0.72 0.975854
Target:  5'- aGACGGuGGCUACGUugACUCCcauuugccGAGCa -3'
miRNA:   3'- gUUGCU-UCGAUGCGugUGAGGa-------CUUG- -5'
10493 5' -50.1 NC_002687.1 + 225869 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.