Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 248497 | 0.67 | 0.999385 |
Target: 5'- uGACGucacaccgucauucAGGaCaACGCGCAcCUCCUGGACg -3' miRNA: 3'- gUUGC--------------UUC-GaUGCGUGU-GAGGACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 21636 | 0.66 | 0.99985 |
Target: 5'- ---aGGAGCUGCGUAC-CUUCUGu-- -3' miRNA: 3'- guugCUUCGAUGCGUGuGAGGACuug -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 308482 | 0.69 | 0.996944 |
Target: 5'- gGGCaGAGCUACGCggcuuccACACUaCCgUGAACa -3' miRNA: 3'- gUUGcUUCGAUGCG-------UGUGA-GG-ACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 31848 | 0.67 | 0.999422 |
Target: 5'- aGACcaaauGCUGCGCGgcUACUCCcUGAACu -3' miRNA: 3'- gUUGcuu--CGAUGCGU--GUGAGG-ACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 115248 | 0.66 | 0.999759 |
Target: 5'- aAACGAAGCUGCGCGucgucaACUUUcGAAa -3' miRNA: 3'- gUUGCUUCGAUGCGUg-----UGAGGaCUUg -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 67555 | 0.68 | 0.99895 |
Target: 5'- aCAACc-AGCUACGCAUGCUUCgGAGu -3' miRNA: 3'- -GUUGcuUCGAUGCGUGUGAGGaCUUg -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 277152 | 0.67 | 0.999622 |
Target: 5'- cCGACGAGGCaGCGCGCgggGCUUUUGc-- -3' miRNA: 3'- -GUUGCUUCGaUGCGUG---UGAGGACuug -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 201850 | 0.67 | 0.9995 |
Target: 5'- cCAGCGGcggcuuggcacaguGGCUcACGCGCGCUCgggcgGGGCa -3' miRNA: 3'- -GUUGCU--------------UCGA-UGCGUGUGAGga---CUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 36175 | 0.69 | 0.996992 |
Target: 5'- uGACGGAGagggGCGCGCACUCggaUGuACg -3' miRNA: 3'- gUUGCUUCga--UGCGUGUGAGg--ACuUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 248869 | 0.7 | 0.991611 |
Target: 5'- ---aGGAGgUGCGCGUugUCCUGAAUg -3' miRNA: 3'- guugCUUCgAUGCGUGugAGGACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 271198 | 0.66 | 0.999809 |
Target: 5'- -cACG-GGCgcCGCGCACUCUUGGc- -3' miRNA: 3'- guUGCuUCGauGCGUGUGAGGACUug -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 7078 | 0.72 | 0.975854 |
Target: 5'- aGACGGcuuCUAUGCACACUCCUuGAAg -3' miRNA: 3'- gUUGCUuc-GAUGCGUGUGAGGA-CUUg -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 69991 | 0.66 | 0.999759 |
Target: 5'- aCAACGAAGaCUguuGCGCGCACgucuUCCguuGCu -3' miRNA: 3'- -GUUGCUUC-GA---UGCGUGUG----AGGacuUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 178788 | 0.74 | 0.944544 |
Target: 5'- -cACGAAGCcgagcugUACGCAUACUUgCUGAGCu -3' miRNA: 3'- guUGCUUCG-------AUGCGUGUGAG-GACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 284748 | 0.66 | 0.999697 |
Target: 5'- ---gGAAGCUgucgAUGCAC-CUgCUGAACg -3' miRNA: 3'- guugCUUCGA----UGCGUGuGAgGACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 44714 | 0.69 | 0.995884 |
Target: 5'- uCGACgGAGGCcgGCGCAgACggagacCCUGAACc -3' miRNA: 3'- -GUUG-CUUCGa-UGCGUgUGa-----GGACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 273868 | 0.67 | 0.999531 |
Target: 5'- aAAgGAAGCUACG-AUACgUCCgGAGCu -3' miRNA: 3'- gUUgCUUCGAUGCgUGUG-AGGaCUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 268247 | 0.71 | 0.984409 |
Target: 5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3' miRNA: 3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 91227 | 0.68 | 0.99895 |
Target: 5'- cCGGCGccaguacGCUugGCACcgaucauaaggGCUCCUGAAa -3' miRNA: 3'- -GUUGCuu-----CGAugCGUG-----------UGAGGACUUg -5' |
|||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 10568 | 0.69 | 0.997446 |
Target: 5'- gGACGAAGaaACGCACacgguGCUCUUGGGg -3' miRNA: 3'- gUUGCUUCgaUGCGUG-----UGAGGACUUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home