Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10493 | 5' | -50.1 | NC_002687.1 | + | 268247 | 0.71 | 0.984409 |
Target: 5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3' miRNA: 3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 10568 | 0.69 | 0.997446 |
Target: 5'- gGACGAAGaaACGCACacgguGCUCUUGGGg -3' miRNA: 3'- gUUGCUUCgaUGCGUG-----UGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 36175 | 0.69 | 0.996992 |
Target: 5'- uGACGGAGagggGCGCGCACUCggaUGuACg -3' miRNA: 3'- gUUGCUUCga--UGCGUGUGAGg--ACuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 44714 | 0.69 | 0.995884 |
Target: 5'- uCGACgGAGGCcgGCGCAgACggagacCCUGAACc -3' miRNA: 3'- -GUUG-CUUCGa-UGCGUgUGa-----GGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 323823 | 0.69 | 0.995216 |
Target: 5'- gAGCGAAGa-ACGCACACUCgaGuACc -3' miRNA: 3'- gUUGCUUCgaUGCGUGUGAGgaCuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 69804 | 0.7 | 0.994462 |
Target: 5'- aAGCGGAGC-ACGCGCugUCUgucUGAu- -3' miRNA: 3'- gUUGCUUCGaUGCGUGugAGG---ACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 46111 | 0.7 | 0.993616 |
Target: 5'- uCGACGAAGCguauacaaUGCGCacuaGCugUCCaGAGCu -3' miRNA: 3'- -GUUGCUUCG--------AUGCG----UGugAGGaCUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 309739 | 0.7 | 0.992668 |
Target: 5'- cCGAUG-AGCUcgaGCGUACACUCCaGggUa -3' miRNA: 3'- -GUUGCuUCGA---UGCGUGUGAGGaCuuG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 248869 | 0.7 | 0.991611 |
Target: 5'- ---aGGAGgUGCGCGUugUCCUGAAUg -3' miRNA: 3'- guugCUUCgAUGCGUGugAGGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 91227 | 0.68 | 0.99895 |
Target: 5'- cCGGCGccaguacGCUugGCACcgaucauaaggGCUCCUGAAa -3' miRNA: 3'- -GUUGCuu-----CGAugCGUG-----------UGAGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 217557 | 0.67 | 0.999135 |
Target: 5'- -cGCGGAGCccGCGUACcCUCCUGu-- -3' miRNA: 3'- guUGCUUCGa-UGCGUGuGAGGACuug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 273868 | 0.67 | 0.999531 |
Target: 5'- aAAgGAAGCUACG-AUACgUCCgGAGCu -3' miRNA: 3'- gUUgCUUCGAUGCgUGUG-AGGaCUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 148615 | 0.66 | 0.99985 |
Target: 5'- aGACGAgcccAGCgguaGC-CACUCCUGAc- -3' miRNA: 3'- gUUGCU----UCGaug-CGuGUGAGGACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 271198 | 0.66 | 0.999809 |
Target: 5'- -cACG-GGCgcCGCGCACUCUUGGc- -3' miRNA: 3'- guUGCuUCGauGCGUGUGAGGACUug -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 88828 | 0.66 | 0.999809 |
Target: 5'- --cCGcGGCUGCGgACACacggUCCUGGAa -3' miRNA: 3'- guuGCuUCGAUGCgUGUG----AGGACUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 157124 | 0.66 | 0.999809 |
Target: 5'- gCGGCGAAGCUGCaGacaAUugUCCgGAGa -3' miRNA: 3'- -GUUGCUUCGAUG-Cg--UGugAGGaCUUg -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 69991 | 0.66 | 0.999759 |
Target: 5'- aCAACGAAGaCUguuGCGCGCACgucuUCCguuGCu -3' miRNA: 3'- -GUUGCUUC-GA---UGCGUGUG----AGGacuUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 284748 | 0.66 | 0.999697 |
Target: 5'- ---gGAAGCUgucgAUGCAC-CUgCUGAACg -3' miRNA: 3'- guugCUUCGA----UGCGUGuGAgGACUUG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 305767 | 0.67 | 0.999622 |
Target: 5'- gGGCGAAaaaCUGCgGC-CGCUCCUGAcaGCg -3' miRNA: 3'- gUUGCUUc--GAUG-CGuGUGAGGACU--UG- -5' |
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10493 | 5' | -50.1 | NC_002687.1 | + | 126491 | 0.67 | 0.999531 |
Target: 5'- ---aGAAGCUugGCgugGCUCCUuucGAACa -3' miRNA: 3'- guugCUUCGAugCGug-UGAGGA---CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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