miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10493 5' -50.1 NC_002687.1 + 150639 0.72 0.975854
Target:  5'- aGACGGuGGCUACGUugACUCCcauuugccGAGCa -3'
miRNA:   3'- gUUGCU-UCGAUGCGugUGAGGa-------CUUG- -5'
10493 5' -50.1 NC_002687.1 + 26205 0.72 0.975854
Target:  5'- cCAACGAAGC-ACGgACACagCUGAAg -3'
miRNA:   3'- -GUUGCUUCGaUGCgUGUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 270269 0.71 0.984409
Target:  5'- --uUGAAGCgggccaaGCAC-CUCCUGAGCa -3'
miRNA:   3'- guuGCUUCGaug----CGUGuGAGGACUUG- -5'
10493 5' -50.1 NC_002687.1 + 225869 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226055 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226241 0.71 0.989139
Target:  5'- gGACGAacagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 226427 0.71 0.989139
Target:  5'- gGACGAggagacGGCUACGCAgGCagCUGGAg -3'
miRNA:   3'- gUUGCU------UCGAUGCGUgUGagGACUUg -5'
10493 5' -50.1 NC_002687.1 + 200514 0.7 0.994462
Target:  5'- aCAGgGAAGUgguCGaCAUGCUCCUGAAg -3'
miRNA:   3'- -GUUgCUUCGau-GC-GUGUGAGGACUUg -5'
10493 5' -50.1 NC_002687.1 + 129407 0.69 0.995821
Target:  5'- uCAACGAAGCUAUcuauuguGCACAUcacgCCcggGAACg -3'
miRNA:   3'- -GUUGCUUCGAUG-------CGUGUGa---GGa--CUUG- -5'
10493 5' -50.1 NC_002687.1 + 308482 0.69 0.996944
Target:  5'- gGGCaGAGCUACGCggcuuccACACUaCCgUGAACa -3'
miRNA:   3'- gUUGcUUCGAUGCG-------UGUGA-GG-ACUUG- -5'
10493 5' -50.1 NC_002687.1 + 105049 1.11 0.016433
Target:  5'- gCAACGAAGCUACGCACACUCCUGAACg -3'
miRNA:   3'- -GUUGCUUCGAUGCGUGUGAGGACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.