miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10498 5' -58.6 NC_002687.1 + 200708 0.66 0.951118
Target:  5'- aCGUCUGCGAaggcugccgccaGCACGUC-GAGCacgUCCGc -3'
miRNA:   3'- -GCAGGCGUUg-----------CGUGCGGuCUCG---AGGC- -5'
10498 5' -58.6 NC_002687.1 + 333294 0.66 0.948001
Target:  5'- cCGUCCGC-ACGCAgUGuCCAaAGCUCa- -3'
miRNA:   3'- -GCAGGCGuUGCGU-GC-GGUcUCGAGgc -5'
10498 5' -58.6 NC_002687.1 + 55896 0.66 0.948001
Target:  5'- uCGUgCGUAGCGCcgaGCGCUu--GCUCCu -3'
miRNA:   3'- -GCAgGCGUUGCG---UGCGGucuCGAGGc -5'
10498 5' -58.6 NC_002687.1 + 311087 0.66 0.948001
Target:  5'- uCGgCCGcCAGCGC-CGCCAcauGCUUCGa -3'
miRNA:   3'- -GCaGGC-GUUGCGuGCGGUcu-CGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 139724 0.66 0.939644
Target:  5'- aCGUugaCCGCAA-GCACGUgAGAGCcacgCCa -3'
miRNA:   3'- -GCA---GGCGUUgCGUGCGgUCUCGa---GGc -5'
10498 5' -58.6 NC_002687.1 + 161820 0.66 0.939644
Target:  5'- gGUCCGCGugGCccugAUGCUgaugaauGGGCUCaCGg -3'
miRNA:   3'- gCAGGCGUugCG----UGCGGu------CUCGAG-GC- -5'
10498 5' -58.6 NC_002687.1 + 170750 0.66 0.939644
Target:  5'- --cUCGCGuCGCGCGCCGGuucguGCcCCGg -3'
miRNA:   3'- gcaGGCGUuGCGUGCGGUCu----CGaGGC- -5'
10498 5' -58.6 NC_002687.1 + 180347 0.66 0.939205
Target:  5'- gCGUCCaCGGCGCGuucaacgUGCUGGAGUucuUCCGg -3'
miRNA:   3'- -GCAGGcGUUGCGU-------GCGGUCUCG---AGGC- -5'
10498 5' -58.6 NC_002687.1 + 117933 0.66 0.935159
Target:  5'- uGUagGCGuCGCcauCGCCGGuGCUCCGa -3'
miRNA:   3'- gCAggCGUuGCGu--GCGGUCuCGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 141026 0.66 0.935159
Target:  5'- aGUCUGCAGgGCAUGgagaCAGAaCUCCa -3'
miRNA:   3'- gCAGGCGUUgCGUGCg---GUCUcGAGGc -5'
10498 5' -58.6 NC_002687.1 + 332210 0.66 0.93284
Target:  5'- cCGUCguuggaggcaugaGCAACGUGCGCgGacucgucGAGCUCCGu -3'
miRNA:   3'- -GCAGg------------CGUUGCGUGCGgU-------CUCGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 109946 0.67 0.920467
Target:  5'- -uUCgGCAACGUaAUGCgAGGGCUCUa -3'
miRNA:   3'- gcAGgCGUUGCG-UGCGgUCUCGAGGc -5'
10498 5' -58.6 NC_002687.1 + 135272 0.67 0.920467
Target:  5'- --aCCGCGucGCgGUACGCCAGAGCacUCUu -3'
miRNA:   3'- gcaGGCGU--UG-CGUGCGGUCUCG--AGGc -5'
10498 5' -58.6 NC_002687.1 + 119519 0.67 0.920467
Target:  5'- -cUCCGCGAgGC-UGUCAGGuGUUCCGg -3'
miRNA:   3'- gcAGGCGUUgCGuGCGGUCU-CGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 108094 0.67 0.920467
Target:  5'- aGUCCGCGGCGgAUGCU----CUCCGa -3'
miRNA:   3'- gCAGGCGUUGCgUGCGGucucGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 156594 0.67 0.920467
Target:  5'- uCGUCCGaCGACGCucgACGaCUuauGAGCUUCa -3'
miRNA:   3'- -GCAGGC-GUUGCG---UGC-GGu--CUCGAGGc -5'
10498 5' -58.6 NC_002687.1 + 58602 0.67 0.920467
Target:  5'- cCGU-CGCuGACGCcauCGUCGGuGCUCCGu -3'
miRNA:   3'- -GCAgGCG-UUGCGu--GCGGUCuCGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 254613 0.67 0.915157
Target:  5'- cCGUCUGCAGCaGguUGaCAGcGCUCCGc -3'
miRNA:   3'- -GCAGGCGUUG-CguGCgGUCuCGAGGC- -5'
10498 5' -58.6 NC_002687.1 + 108214 0.67 0.914615
Target:  5'- uCGUCUuCGACGUcugcguaauaguuGCGUCGGAGC-CCGg -3'
miRNA:   3'- -GCAGGcGUUGCG-------------UGCGGUCUCGaGGC- -5'
10498 5' -58.6 NC_002687.1 + 69066 0.67 0.909641
Target:  5'- uGUCgGCggUGC-CGCCAGuGUUUCa -3'
miRNA:   3'- gCAGgCGuuGCGuGCGGUCuCGAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.