miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
105 5' -57.3 AC_000006.1 + 4600 0.69 0.309186
Target:  5'- --uCGGAGGgGGggaUCauGUCCACCUGCGg -3'
miRNA:   3'- cauGCUUCCgCCg--AG--CAGGUGGACGU- -5'
105 5' -57.3 AC_000006.1 + 23875 0.68 0.333396
Target:  5'- -gGCGAGGcGCGGCgggacuaUGUCCGCgaCUGCGu -3'
miRNA:   3'- caUGCUUC-CGCCGa------GCAGGUG--GACGU- -5'
105 5' -57.3 AC_000006.1 + 5666 0.67 0.385878
Target:  5'- cGUGCGAGGgguaGCGGUcgUUGUCCACCa--- -3'
miRNA:   3'- -CAUGCUUC----CGCCG--AGCAGGUGGacgu -5'
105 5' -57.3 AC_000006.1 + 20941 0.67 0.42377
Target:  5'- cGUGCaGGGGCccgaCUCG-CCGCCUGCGg -3'
miRNA:   3'- -CAUGcUUCCGcc--GAGCaGGUGGACGU- -5'
105 5' -57.3 AC_000006.1 + 9649 0.66 0.453606
Target:  5'- -gGCGGAGGCGGa--GUCUuCCaUGCGg -3'
miRNA:   3'- caUGCUUCCGCCgagCAGGuGG-ACGU- -5'
105 5' -57.3 AC_000006.1 + 9960 0.66 0.463802
Target:  5'- aGUGCGgcGGCGGCUggCGgugagCgGCCaGCGc -3'
miRNA:   3'- -CAUGCuuCCGCCGA--GCa----GgUGGaCGU- -5'
105 5' -57.3 AC_000006.1 + 12607 0.79 0.060464
Target:  5'- ---gGAAGGUcuGCUCGUCCACCUGCGc -3'
miRNA:   3'- caugCUUCCGc-CGAGCAGGUGGACGU- -5'
105 5' -57.3 AC_000006.1 + 15574 0.73 0.149135
Target:  5'- -gGCGgcGGCGGCcgcUCGUCUgcgaguccuGCCUGCGg -3'
miRNA:   3'- caUGCuuCCGCCG---AGCAGG---------UGGACGU- -5'
105 5' -57.3 AC_000006.1 + 15262 0.72 0.197094
Target:  5'- -gGCGgcGGCGGUggcaGUCCGCCcGCGc -3'
miRNA:   3'- caUGCuuCCGCCGag--CAGGUGGaCGU- -5'
105 5' -57.3 AC_000006.1 + 14285 0.71 0.213915
Target:  5'- uUGCucAGGCGGCUCucugugaaGUCCACCccGCAg -3'
miRNA:   3'- cAUGcuUCCGCCGAG--------CAGGUGGa-CGU- -5'
105 5' -57.3 AC_000006.1 + 16611 0.67 0.376761
Target:  5'- gGUGCGgcGGCGGCguuugcuggcUGggCGCCUGCGg -3'
miRNA:   3'- -CAUGCuuCCGCCGa---------GCagGUGGACGU- -5'
105 5' -57.3 AC_000006.1 + 14664 0.66 0.474118
Target:  5'- -gACGuccgGGGUGGUgagcagCGUCCACgaCUGCAc -3'
miRNA:   3'- caUGCu---UCCGCCGa-----GCAGGUG--GACGU- -5'
105 5' -57.3 AC_000006.1 + 17470 1.09 0.000338
Target:  5'- cGUACGAAGGCGGCUCGUCCACCUGCAg -3'
miRNA:   3'- -CAUGCUUCCGCCGAGCAGGUGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.