Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1050 | 3' | -57.4 | NC_000924.1 | + | 24597 | 0.66 | 0.626879 |
|
Target: 5'- -uGGAGUACGCCG-CGGGCaaCGGugcGGc -3' miRNA: 3'- guCUUCAUGCGGCuGUCCG--GCCu--CCu -5' |
|||||||
| 1050 | 3' | -57.4 | NC_000924.1 | + | 26518 | 0.67 | 0.573313 |
|
Target: 5'- cCAGGAGagcGCGCUGGCGuGCUGG-GGAa -3' miRNA: 3'- -GUCUUCa--UGCGGCUGUcCGGCCuCCU- -5' |
|||||||
| 1050 | 3' | -57.4 | NC_000924.1 | + | 6353 | 0.68 | 0.531235 |
|
Target: 5'- cCGGAAGUuaACGCUaaGGCucuGGCCuGGGGAa -3' miRNA: 3'- -GUCUUCA--UGCGG--CUGu--CCGGcCUCCU- -5' |
|||||||
| 1050 | 3' | -57.4 | NC_000924.1 | + | 51279 | 0.69 | 0.45966 |
|
Target: 5'- gAGAAGUggcgcguACGCCGGaugaaaauCAGGCCGGAcguGGu -3' miRNA: 3'- gUCUUCA-------UGCGGCU--------GUCCGGCCU---CCu -5' |
|||||||
| 1050 | 3' | -57.4 | NC_000924.1 | + | 51932 | 0.7 | 0.413365 |
|
Target: 5'- -cGAAG-ACGaaacacaauaCGGCAGGCUGGGGGGa -3' miRNA: 3'- guCUUCaUGCg---------GCUGUCCGGCCUCCU- -5' |
|||||||
| 1050 | 3' | -57.4 | NC_000924.1 | + | 51590 | 1.08 | 0.000806 |
|
Target: 5'- gCAGAAGUACGCCGACAGGCCGGAGGAa -3' miRNA: 3'- -GUCUUCAUGCGGCUGUCCGGCCUCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home