miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10506 3' -56 NC_002687.1 + 57792 0.66 0.976467
Target:  5'- --aGAGAGGGUGgUUUGCaUCUGCCc- -3'
miRNA:   3'- cugUUCUCCCACgAAGUG-AGGCGGca -5'
10506 3' -56 NC_002687.1 + 302882 0.66 0.976467
Target:  5'- --aGGGAGGGgaaugGCUgcgggCGCUUgGCCGUu -3'
miRNA:   3'- cugUUCUCCCa----CGAa----GUGAGgCGGCA- -5'
10506 3' -56 NC_002687.1 + 309819 0.66 0.97403
Target:  5'- gGAgGAGGGGGUGUUagcUACUguagCCGCUGUa -3'
miRNA:   3'- -CUgUUCUCCCACGAa--GUGA----GGCGGCA- -5'
10506 3' -56 NC_002687.1 + 308794 0.66 0.97403
Target:  5'- -cCGGGAGGGggcGCgccCGCcCCGCCGg -3'
miRNA:   3'- cuGUUCUCCCa--CGaa-GUGaGGCGGCa -5'
10506 3' -56 NC_002687.1 + 270365 0.66 0.971414
Target:  5'- cGGC-AGcGGGUGCUcgUCAuCUCCggcGCCGUa -3'
miRNA:   3'- -CUGuUCuCCCACGA--AGU-GAGG---CGGCA- -5'
10506 3' -56 NC_002687.1 + 217198 0.66 0.971414
Target:  5'- cACAGGAGGGUacGCgg-GCUCCGCg-- -3'
miRNA:   3'- cUGUUCUCCCA--CGaagUGAGGCGgca -5'
10506 3' -56 NC_002687.1 + 323508 0.66 0.968614
Target:  5'- uGACAauGGAGGGUGUUgu-CUaCUGCUGUa -3'
miRNA:   3'- -CUGU--UCUCCCACGAaguGA-GGCGGCA- -5'
10506 3' -56 NC_002687.1 + 270214 0.66 0.968614
Target:  5'- cGGCAaccuGGAuacGGaGUGCUUCuuCUUCGCCGUc -3'
miRNA:   3'- -CUGU----UCU---CC-CACGAAGu-GAGGCGGCA- -5'
10506 3' -56 NC_002687.1 + 142632 0.66 0.967737
Target:  5'- aGGCAGGucguugcggguagaGGGGUGUUgucUACUgCCGCCGa -3'
miRNA:   3'- -CUGUUC--------------UCCCACGAa--GUGA-GGCGGCa -5'
10506 3' -56 NC_002687.1 + 264540 0.67 0.965624
Target:  5'- --gGGGAGGGUGCggcggcgUGCUCCGCa-- -3'
miRNA:   3'- cugUUCUCCCACGaa-----GUGAGGCGgca -5'
10506 3' -56 NC_002687.1 + 104728 0.67 0.96244
Target:  5'- cGACGAGuacguGGGUGgc-CACgCCGCCGUu -3'
miRNA:   3'- -CUGUUCu----CCCACgaaGUGaGGCGGCA- -5'
10506 3' -56 NC_002687.1 + 22121 0.67 0.959055
Target:  5'- -cCAGGAGGuG-GCggacgCGCUCCGCCa- -3'
miRNA:   3'- cuGUUCUCC-CaCGaa---GUGAGGCGGca -5'
10506 3' -56 NC_002687.1 + 268148 0.68 0.93901
Target:  5'- cGGCAAu-GGGUGCUcgUCAuCUCCggcGCCGUa -3'
miRNA:   3'- -CUGUUcuCCCACGA--AGU-GAGG---CGGCA- -5'
10506 3' -56 NC_002687.1 + 21698 0.7 0.889286
Target:  5'- gGAUGAGAGGG-GCaaUACUCCcGCCGa -3'
miRNA:   3'- -CUGUUCUCCCaCGaaGUGAGG-CGGCa -5'
10506 3' -56 NC_002687.1 + 293908 0.71 0.83901
Target:  5'- cGCGAGAGGGggcUGCUgcugUCGCUgCUGCUGUa -3'
miRNA:   3'- cUGUUCUCCC---ACGA----AGUGA-GGCGGCA- -5'
10506 3' -56 NC_002687.1 + 141296 1.08 0.007141
Target:  5'- cGACAAGAGGGUGCUUCACUCCGCCGUg -3'
miRNA:   3'- -CUGUUCUCCCACGAAGUGAGGCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.