miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10506 5' -50.6 NC_002687.1 + 158893 0.66 0.999707
Target:  5'- --cCAGGggGUGUUGAGGUAUa---- -3'
miRNA:   3'- guuGUCCuuCACGACUUCAUGgagga -5'
10506 5' -50.6 NC_002687.1 + 207833 0.66 0.999634
Target:  5'- uGACGGacGGAGc-CUGGAGUGCCUUCUg -3'
miRNA:   3'- gUUGUC--CUUCacGACUUCAUGGAGGA- -5'
10506 5' -50.6 NC_002687.1 + 16325 0.66 0.999484
Target:  5'- -cACAGGAgggaacccaucuguuGGUGCUGAGGUACa--Cg -3'
miRNA:   3'- guUGUCCU---------------UCACGACUUCAUGgagGa -5'
10506 5' -50.6 NC_002687.1 + 16060 0.66 0.999484
Target:  5'- -cACAGGAgggaacccaucuguuGGUGCUGAGGUACa--Cg -3'
miRNA:   3'- guUGUCCU---------------UCACGACUUCAUGgagGa -5'
10506 5' -50.6 NC_002687.1 + 15468 0.66 0.999484
Target:  5'- -cACAGGAgggaacccaucuguuGGUGCUGAGGUACa--Cg -3'
miRNA:   3'- guUGUCCU---------------UCACGACUUCAUGgagGa -5'
10506 5' -50.6 NC_002687.1 + 14344 0.66 0.999484
Target:  5'- -cACAGGAgggaacccaucuguuGGUGCUGAGGUACa--Cg -3'
miRNA:   3'- guUGUCCU---------------UCACGACUUCAUGgagGa -5'
10506 5' -50.6 NC_002687.1 + 222044 0.66 0.999439
Target:  5'- ----uGGAGGUGCccucgGAGGUAUCUUCUu -3'
miRNA:   3'- guuguCCUUCACGa----CUUCAUGGAGGA- -5'
10506 5' -50.6 NC_002687.1 + 196453 0.66 0.999439
Target:  5'- ----uGGAGGUGCccucgGAGGUAUCUUCUu -3'
miRNA:   3'- guuguCCUUCACGa----CUUCAUGGAGGA- -5'
10506 5' -50.6 NC_002687.1 + 264131 0.66 0.999297
Target:  5'- gGACAGGGucGUGCUGcgcgaagguaauaGAGUACUggaauUCCUg -3'
miRNA:   3'- gUUGUCCUu-CACGAC-------------UUCAUGG-----AGGA- -5'
10506 5' -50.6 NC_002687.1 + 234789 0.66 0.999268
Target:  5'- gGACAuGGAAGUGUUGGAGgaacuuuuggcguaCUCCa -3'
miRNA:   3'- gUUGU-CCUUCACGACUUCaug-----------GAGGa -5'
10506 5' -50.6 NC_002687.1 + 271843 0.67 0.999159
Target:  5'- aGACAGGc--UGCUGggGUAuuauCCUCUa -3'
miRNA:   3'- gUUGUCCuucACGACuuCAU----GGAGGa -5'
10506 5' -50.6 NC_002687.1 + 201891 0.68 0.997382
Target:  5'- gGGCAGGcGGGUGUguuuaugucggucgUGAGGUAUCUCUg -3'
miRNA:   3'- gUUGUCC-UUCACG--------------ACUUCAUGGAGGa -5'
10506 5' -50.6 NC_002687.1 + 128026 0.69 0.994584
Target:  5'- uGACAGaauGUGCUGAuGGUcaACCUCCg -3'
miRNA:   3'- gUUGUCcuuCACGACU-UCA--UGGAGGa -5'
10506 5' -50.6 NC_002687.1 + 180096 0.69 0.994584
Target:  5'- --uCAGGAuGUGCUGAAGggUgUCCUu -3'
miRNA:   3'- guuGUCCUuCACGACUUCauGgAGGA- -5'
10506 5' -50.6 NC_002687.1 + 115198 0.69 0.992821
Target:  5'- gAACAGG--GUGUUGAgcGGUGCCUCg- -3'
miRNA:   3'- gUUGUCCuuCACGACU--UCAUGGAGga -5'
10506 5' -50.6 NC_002687.1 + 280317 0.71 0.98082
Target:  5'- gGAC-GGAGGUGUUGGAGUGugUCCa -3'
miRNA:   3'- gUUGuCCUUCACGACUUCAUggAGGa -5'
10506 5' -50.6 NC_002687.1 + 238199 0.74 0.926299
Target:  5'- aCGAUGGGAAGuUGUUGggGgGCCUCUg -3'
miRNA:   3'- -GUUGUCCUUC-ACGACuuCaUGGAGGa -5'
10506 5' -50.6 NC_002687.1 + 141332 0.87 0.326449
Target:  5'- uCAACAGGAAGUGgUcAAGUACCUCCUg -3'
miRNA:   3'- -GUUGUCCUUCACgAcUUCAUGGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.