miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10507 3' -50.5 NC_002687.1 + 171346 0.66 0.999881
Target:  5'- cGGCGUCucgUCCAuguGAUuGACGGCGu -3'
miRNA:   3'- uCCGUAGua-GGGUuuuCUG-CUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 2407 0.66 0.999881
Target:  5'- uGGCGUgaacugCAUCCUccugcugaAGGAGACGgACGACu -3'
miRNA:   3'- uCCGUA------GUAGGG--------UUUUCUGC-UGCUGc -5'
10507 3' -50.5 NC_002687.1 + 79605 0.66 0.999881
Target:  5'- -aGCAacUCuAUCCCGAucGACGAUGuCGa -3'
miRNA:   3'- ucCGU--AG-UAGGGUUuuCUGCUGCuGC- -5'
10507 3' -50.5 NC_002687.1 + 253418 0.66 0.999881
Target:  5'- cGGCG-CGUCaCCGAuguuCGACGACa -3'
miRNA:   3'- uCCGUaGUAG-GGUUuucuGCUGCUGc -5'
10507 3' -50.5 NC_002687.1 + 301444 0.66 0.999881
Target:  5'- cGGCcgC--CCCAGAAuGACGACGGUGa -3'
miRNA:   3'- uCCGuaGuaGGGUUUU-CUGCUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 7681 0.66 0.999881
Target:  5'- uGGGCAugaUCAUCCUgcgGGAAGAguUGACGGa- -3'
miRNA:   3'- -UCCGU---AGUAGGG---UUUUCU--GCUGCUgc -5'
10507 3' -50.5 NC_002687.1 + 65795 0.66 0.999862
Target:  5'- aAGGCGUCGagacgucugugaacuUCCUGucGGGCaaacuaGACGACGg -3'
miRNA:   3'- -UCCGUAGU---------------AGGGUuuUCUG------CUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 104695 0.66 0.999848
Target:  5'- cGGGCucucCAUCuUCGAGGGACcagccgaaGACGACGa -3'
miRNA:   3'- -UCCGua--GUAG-GGUUUUCUG--------CUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 41257 0.66 0.999848
Target:  5'- uAGGCuUCGUCggaGGAguuAGACGAUGGCGc -3'
miRNA:   3'- -UCCGuAGUAGgg-UUU---UCUGCUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 63789 0.66 0.999848
Target:  5'- cAGGUAgcacaCGUCgUuuGAGugGGCGGCGu -3'
miRNA:   3'- -UCCGUa----GUAGgGuuUUCugCUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 159199 0.66 0.999848
Target:  5'- cGGCcgCcgCCUccgggcuuucGAccGGCGGCGACGg -3'
miRNA:   3'- uCCGuaGuaGGG----------UUuuCUGCUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 151835 0.66 0.999836
Target:  5'- uGGUGUCAUgCauaucggcgacgcGGACGACGACGa -3'
miRNA:   3'- uCCGUAGUAgGguuu---------UCUGCUGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 77723 0.66 0.999807
Target:  5'- cGGGCA-CAaggCCaAAGAGGCGAUGGCc -3'
miRNA:   3'- -UCCGUaGUa--GGgUUUUCUGCUGCUGc -5'
10507 3' -50.5 NC_002687.1 + 102946 0.66 0.999807
Target:  5'- cAGGUccUCGUCCuCAuucAAGACGAaGACGg -3'
miRNA:   3'- -UCCGu-AGUAGG-GUu--UUCUGCUgCUGC- -5'
10507 3' -50.5 NC_002687.1 + 272266 0.66 0.999807
Target:  5'- cGGCGUCAUCgacggUCAGGGGAUaguACGACa -3'
miRNA:   3'- uCCGUAGUAG-----GGUUUUCUGc--UGCUGc -5'
10507 3' -50.5 NC_002687.1 + 112749 0.66 0.999757
Target:  5'- gAGGUAUguUCUCAGGAGGCcagaGACGcCGu -3'
miRNA:   3'- -UCCGUAguAGGGUUUUCUG----CUGCuGC- -5'
10507 3' -50.5 NC_002687.1 + 219430 0.66 0.999757
Target:  5'- cAGGCAUCGUgcaCCgCGAAGGAUGcCGGUGa -3'
miRNA:   3'- -UCCGUAGUA---GG-GUUUUCUGCuGCUGC- -5'
10507 3' -50.5 NC_002687.1 + 199153 0.66 0.999757
Target:  5'- uGGGCGUacuggaGUCCUGAAGGAgCGGUGugGg -3'
miRNA:   3'- -UCCGUAg-----UAGGGUUUUCU-GCUGCugC- -5'
10507 3' -50.5 NC_002687.1 + 241579 0.66 0.999696
Target:  5'- uGGGCAUCGaCCC----GGCGACGGg- -3'
miRNA:   3'- -UCCGUAGUaGGGuuuuCUGCUGCUgc -5'
10507 3' -50.5 NC_002687.1 + 266417 0.66 0.999696
Target:  5'- gGGGCAUCA-CCCA--GGuACGA-GACa -3'
miRNA:   3'- -UCCGUAGUaGGGUuuUC-UGCUgCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.