miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10509 3' -55.9 NC_002687.1 + 248700 0.66 0.985804
Target:  5'- cGCCGCCGucucCGCaGCUAAgGUguccagUUCUGUCg -3'
miRNA:   3'- -CGGUGGUu---GCG-CGGUUgCG------AAGGCAG- -5'
10509 3' -55.9 NC_002687.1 + 227317 0.66 0.985804
Target:  5'- aGCCACCGACaccaccaccgGCaGCCGACGgagCCGa- -3'
miRNA:   3'- -CGGUGGUUG----------CG-CGGUUGCgaaGGCag -5'
10509 3' -55.9 NC_002687.1 + 236876 0.66 0.985804
Target:  5'- aGCUAUuaauagggcgUAACGCGCCGGCGCa--CGUa -3'
miRNA:   3'- -CGGUG----------GUUGCGCGGUUGCGaagGCAg -5'
10509 3' -55.9 NC_002687.1 + 153964 0.66 0.985804
Target:  5'- aGUUGCgCAGCuCGCCGACGUgcaUUCCGgUCa -3'
miRNA:   3'- -CGGUG-GUUGcGCGGUUGCG---AAGGC-AG- -5'
10509 3' -55.9 NC_002687.1 + 68872 0.66 0.985804
Target:  5'- -aCACCAAUGCuGCCAcugGUUUCCGa- -3'
miRNA:   3'- cgGUGGUUGCG-CGGUug-CGAAGGCag -5'
10509 3' -55.9 NC_002687.1 + 20754 0.66 0.985804
Target:  5'- gGCUGCCG--GUGCCGAUGUcaacUUCCGUa -3'
miRNA:   3'- -CGGUGGUugCGCGGUUGCG----AAGGCAg -5'
10509 3' -55.9 NC_002687.1 + 247965 0.66 0.985804
Target:  5'- gGCUugUGGCGgGCCAugGCUagCCa-- -3'
miRNA:   3'- -CGGugGUUGCgCGGUugCGAa-GGcag -5'
10509 3' -55.9 NC_002687.1 + 166294 0.66 0.985804
Target:  5'- aCgGCCGGCGCGCUAugGUaUCagGUUg -3'
miRNA:   3'- cGgUGGUUGCGCGGUugCGaAGg-CAG- -5'
10509 3' -55.9 NC_002687.1 + 112728 0.66 0.984138
Target:  5'- aGCCACCGcugaACGCGaCGGCGUUUgUGa- -3'
miRNA:   3'- -CGGUGGU----UGCGCgGUUGCGAAgGCag -5'
10509 3' -55.9 NC_002687.1 + 79382 0.66 0.982327
Target:  5'- uGCCACCcaguucgacaagAGCGUGCaCGACGUgUUCC-UCa -3'
miRNA:   3'- -CGGUGG------------UUGCGCG-GUUGCG-AAGGcAG- -5'
10509 3' -55.9 NC_002687.1 + 58601 0.66 0.982327
Target:  5'- cGUCGCUGACGCcaucGUCggUGCU-CCGUUa -3'
miRNA:   3'- -CGGUGGUUGCG----CGGuuGCGAaGGCAG- -5'
10509 3' -55.9 NC_002687.1 + 227173 0.66 0.982327
Target:  5'- cGCCACCGccAC-CGCCAcCGCcaCCGg- -3'
miRNA:   3'- -CGGUGGU--UGcGCGGUuGCGaaGGCag -5'
10509 3' -55.9 NC_002687.1 + 24629 0.66 0.982327
Target:  5'- -aCACguGCGUGCCAACGCgaaugcUCCu-- -3'
miRNA:   3'- cgGUGguUGCGCGGUUGCGa-----AGGcag -5'
10509 3' -55.9 NC_002687.1 + 332563 0.66 0.982327
Target:  5'- cGCUcCCAACGCGCUcucGACGUa-CCaGUCa -3'
miRNA:   3'- -CGGuGGUUGCGCGG---UUGCGaaGG-CAG- -5'
10509 3' -55.9 NC_002687.1 + 10388 0.66 0.981755
Target:  5'- uGCCACCAcuucCGCGCCAuccgcaguuucaagGCaGCccgCUGUCc -3'
miRNA:   3'- -CGGUGGUu---GCGCGGU--------------UG-CGaa-GGCAG- -5'
10509 3' -55.9 NC_002687.1 + 233116 0.66 0.981168
Target:  5'- cGCCuCCAugGCcuccucgucuaacucGCCAauaauaACGUUUgCCGUCa -3'
miRNA:   3'- -CGGuGGUugCG---------------CGGU------UGCGAA-GGCAG- -5'
10509 3' -55.9 NC_002687.1 + 37628 0.66 0.980365
Target:  5'- gGCCACagguuuCAACGCGCCccguCGUggCCGg- -3'
miRNA:   3'- -CGGUG------GUUGCGCGGuu--GCGaaGGCag -5'
10509 3' -55.9 NC_002687.1 + 24831 0.66 0.980365
Target:  5'- gGCUGCCGGCGaguuuugugGuCCAACGCgUCgGUCa -3'
miRNA:   3'- -CGGUGGUUGCg--------C-GGUUGCGaAGgCAG- -5'
10509 3' -55.9 NC_002687.1 + 327212 0.66 0.980365
Target:  5'- -gCACCuacuGCGuCGCCAucUGCUUCCG-Cg -3'
miRNA:   3'- cgGUGGu---UGC-GCGGUu-GCGAAGGCaG- -5'
10509 3' -55.9 NC_002687.1 + 142183 0.66 0.980365
Target:  5'- -aCGCCAACGCcguggGCCGACaagaguaccCUUUCGUCa -3'
miRNA:   3'- cgGUGGUUGCG-----CGGUUGc--------GAAGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.