miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10510 5' -56.1 NC_002687.1 + 307742 0.66 0.983214
Target:  5'- uGGAGGccAugGCCaucGGCgagggCGCCGACa -3'
miRNA:   3'- gCCUUCa-UugCGGc--CCGa----GCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 167536 0.66 0.983214
Target:  5'- gCGGAAGcuucgcggcAACGUCGGGC-CuCCAACg -3'
miRNA:   3'- -GCCUUCa--------UUGCGGCCCGaGcGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 300832 0.66 0.974726
Target:  5'- uGG-AGcAACGCCGGGC-CGCguAUg -3'
miRNA:   3'- gCCuUCaUUGCGGCCCGaGCGguUGa -5'
10510 5' -56.1 NC_002687.1 + 217201 0.66 0.974726
Target:  5'- aGGAGGguACG-CGGGCUCcgcgcccuguGCCGGCa -3'
miRNA:   3'- gCCUUCauUGCgGCCCGAG----------CGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 93294 0.67 0.972187
Target:  5'- uGGAGG-AGCGuauuccCCGGGCgauuaCGCCGAUg -3'
miRNA:   3'- gCCUUCaUUGC------GGCCCGa----GCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 308245 0.67 0.971391
Target:  5'- aCGGAGGaaaagGACGCCGucaGCUaaagugaccgagggCGCCAACa -3'
miRNA:   3'- -GCCUUCa----UUGCGGCc--CGA--------------GCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 182461 0.67 0.966566
Target:  5'- uCGGAGG-AACGaCUuGGCcgcuuUCGCCAGCUg -3'
miRNA:   3'- -GCCUUCaUUGC-GGcCCG-----AGCGGUUGA- -5'
10510 5' -56.1 NC_002687.1 + 165354 0.67 0.966566
Target:  5'- aGGAuGGUGAaGCUGGGUUUGCUGAUUu -3'
miRNA:   3'- gCCU-UCAUUgCGGCCCGAGCGGUUGA- -5'
10510 5' -56.1 NC_002687.1 + 22119 0.67 0.963474
Target:  5'- aGGAGGUGGCGgaCGcGCUCcGCCAcaGCUg -3'
miRNA:   3'- gCCUUCAUUGCg-GCcCGAG-CGGU--UGA- -5'
10510 5' -56.1 NC_002687.1 + 241624 0.68 0.949124
Target:  5'- uGGAGGguugGGCGUCGGaGCagGCCAAg- -3'
miRNA:   3'- gCCUUCa---UUGCGGCC-CGagCGGUUga -5'
10510 5' -56.1 NC_002687.1 + 135818 0.68 0.949124
Target:  5'- aCGGGuguGUGgacaACGCCGGGaaucaUgGCCGGCa -3'
miRNA:   3'- -GCCUu--CAU----UGCGGCCCg----AgCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 68037 0.68 0.946688
Target:  5'- aCGGGacGGUGACGgcaCCGGGUgccaccaucaggguuUCGCCGAUc -3'
miRNA:   3'- -GCCU--UCAUUGC---GGCCCG---------------AGCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 148255 0.68 0.931448
Target:  5'- aGG-AGUGGCuaccGCUGGGCUCGUCuGCc -3'
miRNA:   3'- gCCuUCAUUG----CGGCCCGAGCGGuUGa -5'
10510 5' -56.1 NC_002687.1 + 263169 0.69 0.904538
Target:  5'- gCGGcAGGUGACGaaGGGCaUCGCCu--- -3'
miRNA:   3'- -GCC-UUCAUUGCggCCCG-AGCGGuuga -5'
10510 5' -56.1 NC_002687.1 + 145847 0.7 0.898519
Target:  5'- aGGAAG-AGCGCCaGGcGUUCGCCuccguGCa -3'
miRNA:   3'- gCCUUCaUUGCGG-CC-CGAGCGGu----UGa -5'
10510 5' -56.1 NC_002687.1 + 224143 0.7 0.88586
Target:  5'- uGGcGGUGGCGCUGGcGCUggCGCUGGCg -3'
miRNA:   3'- gCCuUCAUUGCGGCC-CGA--GCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 308794 0.7 0.879227
Target:  5'- cCGGGAGggGgcgcgcccgcccCGCCGGGgUCGCCGggugGCUg -3'
miRNA:   3'- -GCCUUCauU------------GCGGCCCgAGCGGU----UGA- -5'
10510 5' -56.1 NC_002687.1 + 226783 0.7 0.86537
Target:  5'- uGGAGGUggUGCCGGuGCcggUGCCggUg -3'
miRNA:   3'- gCCUUCAuuGCGGCC-CGa--GCGGuuGa -5'
10510 5' -56.1 NC_002687.1 + 247483 0.71 0.85076
Target:  5'- aGGAAGUAGacuuCGacuaGGGCUUGCCAAUg -3'
miRNA:   3'- gCCUUCAUU----GCgg--CCCGAGCGGUUGa -5'
10510 5' -56.1 NC_002687.1 + 87717 0.71 0.835436
Target:  5'- uGGGGucAACGCCGGGCguguggCGCUGACc -3'
miRNA:   3'- gCCUUcaUUGCGGCCCGa-----GCGGUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.