miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10511 3' -56.8 NC_002687.1 + 195173 0.7 0.846756
Target:  5'- aGACuUUCAGGCGCAAGgGCcAGccguauGGAGu -3'
miRNA:   3'- -CUG-GAGUCCGCGUUCgCGuUCu-----CCUC- -5'
10511 3' -56.8 NC_002687.1 + 204171 0.7 0.831093
Target:  5'- -cCCUCGGGuCGCAuaucAGCGCGGGGGcGGu -3'
miRNA:   3'- cuGGAGUCC-GCGU----UCGCGUUCUC-CUc -5'
10511 3' -56.8 NC_002687.1 + 214758 0.66 0.968614
Target:  5'- cACCaCcGGCGCAAGUGC--GAGGAa -3'
miRNA:   3'- cUGGaGuCCGCGUUCGCGuuCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 220765 0.7 0.846756
Target:  5'- aGACuUUCAGGCGCAAGgGCcAGccguauGGAGu -3'
miRNA:   3'- -CUG-GAGUCCGCGUUCgCGuUCu-----CCUC- -5'
10511 3' -56.8 NC_002687.1 + 224579 0.7 0.846756
Target:  5'- -uCCUCGa--GCAGGCGCAGGcAGGAGa -3'
miRNA:   3'- cuGGAGUccgCGUUCGCGUUC-UCCUC- -5'
10511 3' -56.8 NC_002687.1 + 241955 0.66 0.968614
Target:  5'- uGCUgCAcGGgGCAagagGGUGCGAGAGGGGc -3'
miRNA:   3'- cUGGaGU-CCgCGU----UCGCGUUCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 268114 0.76 0.512731
Target:  5'- aGGCUUCGGGCG-GGGCuGCGGGGGGGGg -3'
miRNA:   3'- -CUGGAGUCCGCgUUCG-CGUUCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 270405 0.7 0.831093
Target:  5'- aGGCUUCGGGCGgGgcuGCGgAGGGGGAc -3'
miRNA:   3'- -CUGGAGUCCGCgUu--CGCgUUCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 278941 0.68 0.901847
Target:  5'- cACCUUuaucgguGGUGgcAGCGCAGGGGGGGg -3'
miRNA:   3'- cUGGAGu------CCGCguUCGCGUUCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 281845 0.74 0.618527
Target:  5'- aACCUgagCAGGCaggGCGGGCGCGAG-GGAGa -3'
miRNA:   3'- cUGGA---GUCCG---CGUUCGCGUUCuCCUC- -5'
10511 3' -56.8 NC_002687.1 + 284439 0.66 0.968614
Target:  5'- cACCUUcgGGGuCGgAAGCgGUggGGGGAGa -3'
miRNA:   3'- cUGGAG--UCC-GCgUUCG-CGuuCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 295239 0.72 0.743985
Target:  5'- cGCCUCGcGGCGCAGGCGguGGAa--- -3'
miRNA:   3'- cUGGAGU-CCGCGUUCGCguUCUccuc -5'
10511 3' -56.8 NC_002687.1 + 298417 0.74 0.638123
Target:  5'- gGGCCUCcguGGCGCAaauGGCGU--GAGGAGu -3'
miRNA:   3'- -CUGGAGu--CCGCGU---UCGCGuuCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 308677 0.66 0.959055
Target:  5'- aGACacaCGGGUcgaacGCAAGCGUggGGGGGa -3'
miRNA:   3'- -CUGga-GUCCG-----CGUUCGCGuuCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 322328 0.68 0.919084
Target:  5'- uGCCUCaAGGCGCGcuguGCGCAAcuaguGAGGc- -3'
miRNA:   3'- cUGGAG-UCCGCGUu---CGCGUU-----CUCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.