miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10511 3' -56.8 NC_002687.1 + 270405 0.7 0.831093
Target:  5'- aGGCUUCGGGCGgGgcuGCGgAGGGGGAc -3'
miRNA:   3'- -CUGGAGUCCGCgUu--CGCgUUCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 86939 0.66 0.965624
Target:  5'- uGAgCUCAGGCGCcGGUGCGGGu---- -3'
miRNA:   3'- -CUgGAGUCCGCGuUCGCGUUCuccuc -5'
10511 3' -56.8 NC_002687.1 + 159589 1.09 0.004546
Target:  5'- cGACCUCAGGCGCAAGCGCAAGAGGAGg -3'
miRNA:   3'- -CUGGAGUCCGCGUUCGCGUUCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 173468 0.77 0.432028
Target:  5'- gGACUggAGGCGCAaguggaGGCGCAAGuGGAGg -3'
miRNA:   3'- -CUGGagUCCGCGU------UCGCGUUCuCCUC- -5'
10511 3' -56.8 NC_002687.1 + 173516 0.77 0.432028
Target:  5'- gGACUggAGGCGCAaguggaGGCGCAAGuGGAGg -3'
miRNA:   3'- -CUGGagUCCGCGU------UCGCGUUCuCCUC- -5'
10511 3' -56.8 NC_002687.1 + 281845 0.74 0.618527
Target:  5'- aACCUgagCAGGCaggGCGGGCGCGAG-GGAGa -3'
miRNA:   3'- cUGGA---GUCCG---CGUUCGCGUUCuCCUC- -5'
10511 3' -56.8 NC_002687.1 + 298417 0.74 0.638123
Target:  5'- gGGCCUCcguGGCGCAaauGGCGU--GAGGAGu -3'
miRNA:   3'- -CUGGAGu--CCGCGU---UCGCGuuCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 173564 0.73 0.696572
Target:  5'- gGACUggAGGCGCAGGUGgAGGcGGAGg -3'
miRNA:   3'- -CUGGagUCCGCGUUCGCgUUCuCCUC- -5'
10511 3' -56.8 NC_002687.1 + 6319 0.72 0.706186
Target:  5'- cGGCCUUggccauggGGGUGCuguGCGCGGGGGGAc -3'
miRNA:   3'- -CUGGAG--------UCCGCGuu-CGCGUUCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 116823 0.66 0.959055
Target:  5'- uACgUCGuGGCGCAGGuCGauauugauGAGAGGAGg -3'
miRNA:   3'- cUGgAGU-CCGCGUUC-GCg-------UUCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 5495 0.67 0.929485
Target:  5'- cGGCCUUgaucauGGGUGUGcuguGCGCGGGGGGAc -3'
miRNA:   3'- -CUGGAG------UCCGCGUu---CGCGUUCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 173298 0.68 0.919084
Target:  5'- aGCCUCGauaGCGCGGGCGaCAgcAGAGGuAGa -3'
miRNA:   3'- cUGGAGUc--CGCGUUCGC-GU--UCUCC-UC- -5'
10511 3' -56.8 NC_002687.1 + 204171 0.7 0.831093
Target:  5'- -cCCUCGGGuCGCAuaucAGCGCGGGGGcGGu -3'
miRNA:   3'- cuGGAGUCC-GCGU----UCGCGUUCUC-CUc -5'
10511 3' -56.8 NC_002687.1 + 27373 0.67 0.93901
Target:  5'- aACCaCAGGCGCAcgGGUGCcGGuAGGAu -3'
miRNA:   3'- cUGGaGUCCGCGU--UCGCGuUC-UCCUc -5'
10511 3' -56.8 NC_002687.1 + 224579 0.7 0.846756
Target:  5'- -uCCUCGa--GCAGGCGCAGGcAGGAGa -3'
miRNA:   3'- cuGGAGUccgCGUUCGCGUUC-UCCUC- -5'
10511 3' -56.8 NC_002687.1 + 48976 0.68 0.907809
Target:  5'- uGGCggCGuGCGCGGGCGUGAGAGGGu -3'
miRNA:   3'- -CUGgaGUcCGCGUUCGCGUUCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 105920 0.67 0.93901
Target:  5'- -cCCUgcGGCaaCAAGCGCAAGAGGGa -3'
miRNA:   3'- cuGGAguCCGc-GUUCGCGUUCUCCUc -5'
10511 3' -56.8 NC_002687.1 + 284439 0.66 0.968614
Target:  5'- cACCUUcgGGGuCGgAAGCgGUggGGGGAGa -3'
miRNA:   3'- cUGGAG--UCC-GCgUUCG-CGuuCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 17994 0.69 0.861704
Target:  5'- cGGCCgguaaacgCAaGCGCGuAGCGCGcGAGGAGg -3'
miRNA:   3'- -CUGGa-------GUcCGCGU-UCGCGUuCUCCUC- -5'
10511 3' -56.8 NC_002687.1 + 278941 0.68 0.901847
Target:  5'- cACCUUuaucgguGGUGgcAGCGCAGGGGGGGg -3'
miRNA:   3'- cUGGAGu------CCGCguUCGCGUUCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.