Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10511 | 3' | -56.8 | NC_002687.1 | + | 214758 | 0.66 | 0.968614 |
Target: 5'- cACCaCcGGCGCAAGUGC--GAGGAa -3' miRNA: 3'- cUGGaGuCCGCGUUCGCGuuCUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 268114 | 0.76 | 0.512731 |
Target: 5'- aGGCUUCGGGCG-GGGCuGCGGGGGGGGg -3' miRNA: 3'- -CUGGAGUCCGCgUUCG-CGUUCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 295239 | 0.72 | 0.743985 |
Target: 5'- cGCCUCGcGGCGCAGGCGguGGAa--- -3' miRNA: 3'- cUGGAGU-CCGCGUUCGCguUCUccuc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 182454 | 0.71 | 0.780349 |
Target: 5'- cGACCUUGGGUacgucguaGCGGGCGCGAccgccGAGGAc -3' miRNA: 3'- -CUGGAGUCCG--------CGUUCGCGUU-----CUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 220765 | 0.7 | 0.846756 |
Target: 5'- aGACuUUCAGGCGCAAGgGCcAGccguauGGAGu -3' miRNA: 3'- -CUG-GAGUCCGCGUUCgCGuUCu-----CCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 195173 | 0.7 | 0.846756 |
Target: 5'- aGACuUUCAGGCGCAAGgGCcAGccguauGGAGu -3' miRNA: 3'- -CUG-GAGUCCGCGUUCgCGuUCu-----CCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 19338 | 0.7 | 0.846756 |
Target: 5'- aGACuUUCAGGCGCAAGgGCcAGccguauGGAGu -3' miRNA: 3'- -CUG-GAGUCCGCGUUCgCGuUCu-----CCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 18662 | 0.69 | 0.875894 |
Target: 5'- aGCaggggCAGGaGCAGGgGCAGGAGGGGc -3' miRNA: 3'- cUGga---GUCCgCGUUCgCGUUCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 322328 | 0.68 | 0.919084 |
Target: 5'- uGCCUCaAGGCGCGcuguGCGCAAcuaguGAGGc- -3' miRNA: 3'- cUGGAG-UCCGCGUu---CGCGUU-----CUCCuc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 27863 | 0.66 | 0.957645 |
Target: 5'- aGACCaaggggggggggAGGCGCcuuucGGGCGCAGGuGGAGu -3' miRNA: 3'- -CUGGag----------UCCGCG-----UUCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 308677 | 0.66 | 0.959055 |
Target: 5'- aGACacaCGGGUcgaacGCAAGCGUggGGGGGa -3' miRNA: 3'- -CUGga-GUCCG-----CGUUCGCGuuCUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 149807 | 0.66 | 0.959055 |
Target: 5'- aGCCUCGagcuugauGGCGCGAuUGCAgacuaugacGGAGGGGg -3' miRNA: 3'- cUGGAGU--------CCGCGUUcGCGU---------UCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 2670 | 0.66 | 0.96244 |
Target: 5'- aGGCCcaAGGUGCuauuGGCGgCAAuGGGGAGg -3' miRNA: 3'- -CUGGagUCCGCGu---UCGC-GUU-CUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 6319 | 0.72 | 0.706186 |
Target: 5'- cGGCCUUggccauggGGGUGCuguGCGCGGGGGGAc -3' miRNA: 3'- -CUGGAG--------UCCGCGuu-CGCGUUCUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 173564 | 0.73 | 0.696572 |
Target: 5'- gGACUggAGGCGCAGGUGgAGGcGGAGg -3' miRNA: 3'- -CUGGagUCCGCGUUCGCgUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 298417 | 0.74 | 0.638123 |
Target: 5'- gGGCCUCcguGGCGCAaauGGCGU--GAGGAGu -3' miRNA: 3'- -CUGGAGu--CCGCGU---UCGCGuuCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 281845 | 0.74 | 0.618527 |
Target: 5'- aACCUgagCAGGCaggGCGGGCGCGAG-GGAGa -3' miRNA: 3'- cUGGA---GUCCG---CGUUCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 173516 | 0.77 | 0.432028 |
Target: 5'- gGACUggAGGCGCAaguggaGGCGCAAGuGGAGg -3' miRNA: 3'- -CUGGagUCCGCGU------UCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 173468 | 0.77 | 0.432028 |
Target: 5'- gGACUggAGGCGCAaguggaGGCGCAAGuGGAGg -3' miRNA: 3'- -CUGGagUCCGCGU------UCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 284439 | 0.66 | 0.968614 |
Target: 5'- cACCUUcgGGGuCGgAAGCgGUggGGGGAGa -3' miRNA: 3'- cUGGAG--UCC-GCgUUCG-CGuuCUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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