Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10511 | 3' | -56.8 | NC_002687.1 | + | 86939 | 0.66 | 0.965624 |
Target: 5'- uGAgCUCAGGCGCcGGUGCGGGu---- -3' miRNA: 3'- -CUgGAGUCCGCGuUCGCGUUCuccuc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 241955 | 0.66 | 0.968614 |
Target: 5'- uGCUgCAcGGgGCAagagGGUGCGAGAGGGGc -3' miRNA: 3'- cUGGaGU-CCgCGU----UCGCGUUCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 17994 | 0.69 | 0.861704 |
Target: 5'- cGGCCgguaaacgCAaGCGCGuAGCGCGcGAGGAGg -3' miRNA: 3'- -CUGGa-------GUcCGCGU-UCGCGUuCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 224579 | 0.7 | 0.846756 |
Target: 5'- -uCCUCGa--GCAGGCGCAGGcAGGAGa -3' miRNA: 3'- cuGGAGUccgCGUUCGCGUUC-UCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 204171 | 0.7 | 0.831093 |
Target: 5'- -cCCUCGGGuCGCAuaucAGCGCGGGGGcGGu -3' miRNA: 3'- cuGGAGUCC-GCGU----UCGCGUUCUC-CUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 159589 | 1.09 | 0.004546 |
Target: 5'- cGACCUCAGGCGCAAGCGCAAGAGGAGg -3' miRNA: 3'- -CUGGAGUCCGCGUUCGCGUUCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 173468 | 0.77 | 0.432028 |
Target: 5'- gGACUggAGGCGCAaguggaGGCGCAAGuGGAGg -3' miRNA: 3'- -CUGGagUCCGCGU------UCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 173516 | 0.77 | 0.432028 |
Target: 5'- gGACUggAGGCGCAaguggaGGCGCAAGuGGAGg -3' miRNA: 3'- -CUGGagUCCGCGU------UCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 281845 | 0.74 | 0.618527 |
Target: 5'- aACCUgagCAGGCaggGCGGGCGCGAG-GGAGa -3' miRNA: 3'- cUGGA---GUCCG---CGUUCGCGUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 298417 | 0.74 | 0.638123 |
Target: 5'- gGGCCUCcguGGCGCAaauGGCGU--GAGGAGu -3' miRNA: 3'- -CUGGAGu--CCGCGU---UCGCGuuCUCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 173564 | 0.73 | 0.696572 |
Target: 5'- gGACUggAGGCGCAGGUGgAGGcGGAGg -3' miRNA: 3'- -CUGGagUCCGCGUUCGCgUUCuCCUC- -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 6319 | 0.72 | 0.706186 |
Target: 5'- cGGCCUUggccauggGGGUGCuguGCGCGGGGGGAc -3' miRNA: 3'- -CUGGAG--------UCCGCGuu-CGCGUUCUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 152874 | 0.7 | 0.823009 |
Target: 5'- -uCCUCAGaGCGCAAGUGUAccAGGAc -3' miRNA: 3'- cuGGAGUC-CGCGUUCGCGUucUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 270405 | 0.7 | 0.831093 |
Target: 5'- aGGCUUCGGGCGgGgcuGCGgAGGGGGAc -3' miRNA: 3'- -CUGGAGUCCGCgUu--CGCgUUCUCCUc -5' |
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10511 | 3' | -56.8 | NC_002687.1 | + | 284439 | 0.66 | 0.968614 |
Target: 5'- cACCUUcgGGGuCGgAAGCgGUggGGGGAGa -3' miRNA: 3'- cUGGAG--UCC-GCgUUCG-CGuuCUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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