miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10513 3' -55.9 NC_002687.1 + 72250 0.66 0.985907
Target:  5'- -aUCGUCGUAGGCGaCGGccacGGUCg- -3'
miRNA:   3'- acAGCAGCAUCCGC-GCCaca-CUAGgc -5'
10513 3' -55.9 NC_002687.1 + 80521 0.66 0.985907
Target:  5'- gGUCGaUCGU-GGUGgagaCGGUGUuGUCCGa -3'
miRNA:   3'- aCAGC-AGCAuCCGC----GCCACAcUAGGC- -5'
10513 3' -55.9 NC_002687.1 + 226014 0.67 0.978467
Target:  5'- gGUCGUgcucaagcCGgagagGGGgGUGGUGUGGgcggCCGg -3'
miRNA:   3'- aCAGCA--------GCa----UCCgCGCCACACUa---GGC- -5'
10513 3' -55.9 NC_002687.1 + 225828 0.67 0.978467
Target:  5'- gGUCGUgcucaagcCGgagagGGGgGUGGUGUGGgcggCCGg -3'
miRNA:   3'- aCAGCA--------GCa----UCCgCGCCACACUa---GGC- -5'
10513 3' -55.9 NC_002687.1 + 226386 0.67 0.978467
Target:  5'- gGUCGUgcucaagcCGgacagGGGgGUGGUGUGGgcggCCGg -3'
miRNA:   3'- aCAGCA--------GCa----UCCgCGCCACACUa---GGC- -5'
10513 3' -55.9 NC_002687.1 + 302242 0.67 0.978467
Target:  5'- cGUCGgagaucCGUAGaaaCGCGGauggGUGAUCCa -3'
miRNA:   3'- aCAGCa-----GCAUCc--GCGCCa---CACUAGGc -5'
10513 3' -55.9 NC_002687.1 + 18873 0.67 0.978467
Target:  5'- cUGUCcUUGgGGGCGCGGUGgccUCCu -3'
miRNA:   3'- -ACAGcAGCaUCCGCGCCACacuAGGc -5'
10513 3' -55.9 NC_002687.1 + 30233 0.67 0.968458
Target:  5'- cGUCGUUGUuGGCGUGGUcaUGAUgCu -3'
miRNA:   3'- aCAGCAGCAuCCGCGCCAc-ACUAgGc -5'
10513 3' -55.9 NC_002687.1 + 306330 0.68 0.955518
Target:  5'- -uUCGUCG-AGGCGUaccuuGGUGUGucaCCGg -3'
miRNA:   3'- acAGCAGCaUCCGCG-----CCACACua-GGC- -5'
10513 3' -55.9 NC_002687.1 + 217554 0.69 0.919886
Target:  5'- cGUCGaCGgaagAGaCGCGG-GUGAUCCGu -3'
miRNA:   3'- aCAGCaGCa---UCcGCGCCaCACUAGGC- -5'
10513 3' -55.9 NC_002687.1 + 202956 0.72 0.801564
Target:  5'- gGUCGUCGUGGGCGaagaagGGUcUGAcUCCa -3'
miRNA:   3'- aCAGCAGCAUCCGCg-----CCAcACU-AGGc -5'
10513 3' -55.9 NC_002687.1 + 167502 1.09 0.008119
Target:  5'- aUGUCGUCGUAGGCGCGGUGUGAUCCGu -3'
miRNA:   3'- -ACAGCAGCAUCCGCGCCACACUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.