miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10513 5' -58.7 NC_002687.1 + 71679 0.66 0.949329
Target:  5'- gGcCGGgGGCGUCGGGaaggUCGGCGAUg -3'
miRNA:   3'- gC-GCCgUUGCAGCCCgga-GGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 316178 0.66 0.949329
Target:  5'- uGCGGCGGCGgcacccggCGcGGCggaaaaagcaUCCGACGAg -3'
miRNA:   3'- gCGCCGUUGCa-------GC-CCGg---------AGGUUGCUg -5'
10513 5' -58.7 NC_002687.1 + 113930 0.66 0.949329
Target:  5'- aGCGGCGcuuccgGCGaucgCGGuaGCCUUCGACGGu -3'
miRNA:   3'- gCGCCGU------UGCa---GCC--CGGAGGUUGCUg -5'
10513 5' -58.7 NC_002687.1 + 156616 0.66 0.945325
Target:  5'- gGCGG-AGCuGUucaggaUGGGCUcgUCCGACGACg -3'
miRNA:   3'- gCGCCgUUG-CA------GCCCGG--AGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 239043 0.66 0.945325
Target:  5'- aCGC-GCAGCGUCGGugGCCcaCCgAACGAUc -3'
miRNA:   3'- -GCGcCGUUGCAGCC--CGGa-GG-UUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 198344 0.66 0.945325
Target:  5'- --aGGaugaGACGaCGGGCCUCaauuuGCGACa -3'
miRNA:   3'- gcgCCg---UUGCaGCCCGGAGgu---UGCUG- -5'
10513 5' -58.7 NC_002687.1 + 256545 0.66 0.945325
Target:  5'- aGUGGUGACGUUcGGCgCUCCcaagauCGGCa -3'
miRNA:   3'- gCGCCGUUGCAGcCCG-GAGGuu----GCUG- -5'
10513 5' -58.7 NC_002687.1 + 296902 0.66 0.942827
Target:  5'- aCGCuGGCGACGUgcucgCGgagagcaucuuugaaGGCCggacCCGACGACu -3'
miRNA:   3'- -GCG-CCGUUGCA-----GC---------------CCGGa---GGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 103095 0.66 0.94112
Target:  5'- aCGcCGGgaaCAACG-CGGGUg-CCGACGACa -3'
miRNA:   3'- -GC-GCC---GUUGCaGCCCGgaGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 71798 0.66 0.936711
Target:  5'- cCGCGGCGaucgACGaCGGcGUCUCgaUAGCGAUg -3'
miRNA:   3'- -GCGCCGU----UGCaGCC-CGGAG--GUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 129899 0.66 0.936711
Target:  5'- gGUGGUAucaccCG-CaGGCCUCCggUGACa -3'
miRNA:   3'- gCGCCGUu----GCaGcCCGGAGGuuGCUG- -5'
10513 5' -58.7 NC_002687.1 + 77436 0.66 0.936711
Target:  5'- uCGaCGGgAGCGUCGuGCCagCAugGGCu -3'
miRNA:   3'- -GC-GCCgUUGCAGCcCGGagGUugCUG- -5'
10513 5' -58.7 NC_002687.1 + 62760 0.66 0.936711
Target:  5'- uGCuGGCGAaaccgagGUCcaGGGCCUCCcugauACGACc -3'
miRNA:   3'- gCG-CCGUUg------CAG--CCCGGAGGu----UGCUG- -5'
10513 5' -58.7 NC_002687.1 + 328106 0.66 0.936711
Target:  5'- aGCGGCGACGaC-GGCUucgCCAugGAa -3'
miRNA:   3'- gCGCCGUUGCaGcCCGGa--GGUugCUg -5'
10513 5' -58.7 NC_002687.1 + 235769 0.66 0.927769
Target:  5'- gGCGGCAucgaccuccuggauuUGUucgCGGGCUUCCAcaACGAUu -3'
miRNA:   3'- gCGCCGUu--------------GCA---GCCCGGAGGU--UGCUG- -5'
10513 5' -58.7 NC_002687.1 + 252906 0.66 0.927277
Target:  5'- aCGgGGCGAaugagaaacauuUGUCGGGCUggCAGCGGu -3'
miRNA:   3'- -GCgCCGUU------------GCAGCCCGGagGUUGCUg -5'
10513 5' -58.7 NC_002687.1 + 122963 0.66 0.927277
Target:  5'- uCGUGGgaGACGgucgaGGGCCcaCCGACGAUg -3'
miRNA:   3'- -GCGCCg-UUGCag---CCCGGa-GGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 252926 0.66 0.927277
Target:  5'- uGuCGGCuauCGUggacaaGGGCCUcuccaCCGACGACa -3'
miRNA:   3'- gC-GCCGuu-GCAg-----CCCGGA-----GGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 277505 0.66 0.927277
Target:  5'- cCGCGcGCugccuCGUCGgcGGCCaUCgGACGACc -3'
miRNA:   3'- -GCGC-CGuu---GCAGC--CCGG-AGgUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 170164 0.66 0.927277
Target:  5'- cCGUGuCGACGUCGGcGUCggCC-ACGACa -3'
miRNA:   3'- -GCGCcGUUGCAGCC-CGGa-GGuUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.