miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10513 5' -58.7 NC_002687.1 + 62760 0.66 0.936711
Target:  5'- uGCuGGCGAaaccgagGUCcaGGGCCUCCcugauACGACc -3'
miRNA:   3'- gCG-CCGUUg------CAG--CCCGGAGGu----UGCUG- -5'
10513 5' -58.7 NC_002687.1 + 71679 0.66 0.949329
Target:  5'- gGcCGGgGGCGUCGGGaaggUCGGCGAUg -3'
miRNA:   3'- gC-GCCgUUGCAGCCCgga-GGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 71798 0.66 0.936711
Target:  5'- cCGCGGCGaucgACGaCGGcGUCUCgaUAGCGAUg -3'
miRNA:   3'- -GCGCCGU----UGCaGCC-CGGAG--GUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 77436 0.66 0.936711
Target:  5'- uCGaCGGgAGCGUCGuGCCagCAugGGCu -3'
miRNA:   3'- -GC-GCCgUUGCAGCcCGGagGUugCUG- -5'
10513 5' -58.7 NC_002687.1 + 78855 0.71 0.750565
Target:  5'- gCGCGGCcACGUCGGuuuccaaucuuccgaGCCUCUguuugAugGACc -3'
miRNA:   3'- -GCGCCGuUGCAGCC---------------CGGAGG-----UugCUG- -5'
10513 5' -58.7 NC_002687.1 + 88931 0.68 0.887816
Target:  5'- uGCGcGCuGGCG-CGGGCCgcgagUUCGGCGGCa -3'
miRNA:   3'- gCGC-CG-UUGCaGCCCGG-----AGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 91673 0.67 0.91702
Target:  5'- aCGCGGCAACGaagUCGaGCgUCgGAUGAg -3'
miRNA:   3'- -GCGCCGUUGC---AGCcCGgAGgUUGCUg -5'
10513 5' -58.7 NC_002687.1 + 96490 0.75 0.531753
Target:  5'- cCGCGaGCGACG-CGGGCCgcguucUCC-GCGACa -3'
miRNA:   3'- -GCGC-CGUUGCaGCCCGG------AGGuUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 96846 0.68 0.860238
Target:  5'- aCGCGGCccGCGUCgcucgcgGGGCUUCCAcuuCGcACg -3'
miRNA:   3'- -GCGCCGu-UGCAG-------CCCGGAGGUu--GC-UG- -5'
10513 5' -58.7 NC_002687.1 + 103095 0.66 0.94112
Target:  5'- aCGcCGGgaaCAACG-CGGGUg-CCGACGACa -3'
miRNA:   3'- -GC-GCC---GUUGCaGCCCGgaGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 105923 0.66 0.926289
Target:  5'- uGCGGCAACaagcgcaagaGGGaugCCGACGACa -3'
miRNA:   3'- gCGCCGUUGcag-------CCCggaGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 113930 0.66 0.949329
Target:  5'- aGCGGCGcuuccgGCGaucgCGGuaGCCUUCGACGGu -3'
miRNA:   3'- gCGCCGU------UGCa---GCC--CGGAGGUUGCUg -5'
10513 5' -58.7 NC_002687.1 + 122963 0.66 0.927277
Target:  5'- uCGUGGgaGACGgucgaGGGCCcaCCGACGAUg -3'
miRNA:   3'- -GCGCCg-UUGCag---CCCGGa-GGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 129899 0.66 0.936711
Target:  5'- gGUGGUAucaccCG-CaGGCCUCCggUGACa -3'
miRNA:   3'- gCGCCGUu----GCaGcCCGGAGGuuGCUG- -5'
10513 5' -58.7 NC_002687.1 + 141341 0.68 0.874082
Target:  5'- aGUGGUcaaguaccuccugGGgGUCGGGUgUCCAAuCGACa -3'
miRNA:   3'- gCGCCG-------------UUgCAGCCCGgAGGUU-GCUG- -5'
10513 5' -58.7 NC_002687.1 + 154078 0.71 0.719682
Target:  5'- uGcCGGCGuGCGUCGucGCCUCCAgaacACGACg -3'
miRNA:   3'- gC-GCCGU-UGCAGCc-CGGAGGU----UGCUG- -5'
10513 5' -58.7 NC_002687.1 + 156616 0.66 0.945325
Target:  5'- gGCGG-AGCuGUucaggaUGGGCUcgUCCGACGACg -3'
miRNA:   3'- gCGCCgUUG-CA------GCCCGG--AGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 167545 1.1 0.003801
Target:  5'- uCGCGGCAACGUCGGGCCUCCAACGACg -3'
miRNA:   3'- -GCGCCGUUGCAGCCCGGAGGUUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 170164 0.66 0.927277
Target:  5'- cCGUGuCGACGUCGGcGUCggCC-ACGACa -3'
miRNA:   3'- -GCGCcGUUGCAGCC-CGGa-GGuUGCUG- -5'
10513 5' -58.7 NC_002687.1 + 198344 0.66 0.945325
Target:  5'- --aGGaugaGACGaCGGGCCUCaauuuGCGACa -3'
miRNA:   3'- gcgCCg---UUGCaGCCCGGAGgu---UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.