miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10516 3' -50.9 NC_002687.1 + 97527 0.66 0.999501
Target:  5'- -cCACGGGGAGCguuuuccgggGCGuCGGGUUcGCa -3'
miRNA:   3'- uaGUGCCCUUCGa---------CGUuGUUCAGaUG- -5'
10516 3' -50.9 NC_002687.1 + 314627 0.66 0.999081
Target:  5'- gAUCAUGGGAGccaaacauGUUGCAGCGgcccuGG-CUGCa -3'
miRNA:   3'- -UAGUGCCCUU--------CGACGUUGU-----UCaGAUG- -5'
10516 3' -50.9 NC_002687.1 + 70516 0.66 0.999081
Target:  5'- --aGCGGGA--CUGCAuCgAAGUCUACa -3'
miRNA:   3'- uagUGCCCUucGACGUuG-UUCAGAUG- -5'
10516 3' -50.9 NC_002687.1 + 275948 0.66 0.998885
Target:  5'- uUCGgGGGAugcggcAGCUGCugauGCAAGUggACg -3'
miRNA:   3'- uAGUgCCCU------UCGACGu---UGUUCAgaUG- -5'
10516 3' -50.9 NC_002687.1 + 157126 0.67 0.998074
Target:  5'- -aCGCGGcGAAGCUGCAgACAAuuGUCc-- -3'
miRNA:   3'- uaGUGCC-CUUCGACGU-UGUU--CAGaug -5'
10516 3' -50.9 NC_002687.1 + 27512 0.67 0.998074
Target:  5'- uAUCACGGGGuguGuCUGCAGguAuugcGUCUGCc -3'
miRNA:   3'- -UAGUGCCCUu--C-GACGUUguU----CAGAUG- -5'
10516 3' -50.9 NC_002687.1 + 309483 0.67 0.997712
Target:  5'- --gACGGGGAGCUGguGacGGUCgACg -3'
miRNA:   3'- uagUGCCCUUCGACguUguUCAGaUG- -5'
10516 3' -50.9 NC_002687.1 + 210426 0.67 0.997294
Target:  5'- --gACGGGAgcgacGGgaGCGACAGGaCUACc -3'
miRNA:   3'- uagUGCCCU-----UCgaCGUUGUUCaGAUG- -5'
10516 3' -50.9 NC_002687.1 + 18594 0.67 0.996815
Target:  5'- -cCACGGGGuucgccgguGCUGCGACGGuGUCg-- -3'
miRNA:   3'- uaGUGCCCUu--------CGACGUUGUU-CAGaug -5'
10516 3' -50.9 NC_002687.1 + 89037 0.67 0.996815
Target:  5'- uGUCGCGGGGgugAGUUcGCGuucauGGUCUGCg -3'
miRNA:   3'- -UAGUGCCCU---UCGA-CGUugu--UCAGAUG- -5'
10516 3' -50.9 NC_002687.1 + 210941 0.67 0.996815
Target:  5'- aGUC-CGGGAGGuCUGUGGCGGGUUc-- -3'
miRNA:   3'- -UAGuGCCCUUC-GACGUUGUUCAGaug -5'
10516 3' -50.9 NC_002687.1 + 283542 0.68 0.996268
Target:  5'- aGUCACGaGGggGCUcGCGACAcua-UGCa -3'
miRNA:   3'- -UAGUGC-CCuuCGA-CGUUGUucagAUG- -5'
10516 3' -50.9 NC_002687.1 + 34570 0.69 0.992261
Target:  5'- -gCACGGGAGGCaGCuuaGGGUCaACa -3'
miRNA:   3'- uaGUGCCCUUCGaCGuugUUCAGaUG- -5'
10516 3' -50.9 NC_002687.1 + 49950 0.69 0.98992
Target:  5'- aAUCAgagaGGGggGUaucgUGCAACAAGUUgGCa -3'
miRNA:   3'- -UAGUg---CCCuuCG----ACGUUGUUCAGaUG- -5'
10516 3' -50.9 NC_002687.1 + 166379 0.71 0.971971
Target:  5'- aGUCugGGGAGGgaGgGACGGGUacccaUGCa -3'
miRNA:   3'- -UAGugCCCUUCgaCgUUGUUCAg----AUG- -5'
10516 3' -50.9 NC_002687.1 + 331819 0.71 0.969069
Target:  5'- uGUCGCGGaaacGGAGCU-CGACGAGUCcGCg -3'
miRNA:   3'- -UAGUGCC----CUUCGAcGUUGUUCAGaUG- -5'
10516 3' -50.9 NC_002687.1 + 254636 0.73 0.922369
Target:  5'- cGUCACGcguGGcuGCUGCGACAccGUCUGCa -3'
miRNA:   3'- -UAGUGC---CCuuCGACGUUGUu-CAGAUG- -5'
10516 3' -50.9 NC_002687.1 + 104641 0.75 0.870438
Target:  5'- -gCACGGGccuaucuGCUGCAccauuCAAGUCUACa -3'
miRNA:   3'- uaGUGCCCuu-----CGACGUu----GUUCAGAUG- -5'
10516 3' -50.9 NC_002687.1 + 135803 0.77 0.78673
Target:  5'- -aCGcCGGGAaucauGGCcgGCAACGAGUCUGCg -3'
miRNA:   3'- uaGU-GCCCU-----UCGa-CGUUGUUCAGAUG- -5'
10516 3' -50.9 NC_002687.1 + 170115 1.07 0.020077
Target:  5'- cAUCACGGGAAGCUGCAACAAGUCUACc -3'
miRNA:   3'- -UAGUGCCCUUCGACGUUGUUCAGAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.