miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10517 3' -52.2 NC_002687.1 + 215694 0.66 0.99891
Target:  5'- aCGCGUGauaCGGggGCGccauaAGCCCc--CACg -3'
miRNA:   3'- -GCGCAC---GCCuuUGU-----UCGGGuauGUGa -5'
10517 3' -52.2 NC_002687.1 + 63406 0.66 0.99891
Target:  5'- gGCGUGC-GAGAU---CCCAUACGCc -3'
miRNA:   3'- gCGCACGcCUUUGuucGGGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 87703 0.66 0.99889
Target:  5'- gGCGUGUGGcgcuGACcuGCCCAcgggucaggcuguUGCAUg -3'
miRNA:   3'- gCGCACGCCu---UUGuuCGGGU-------------AUGUGa -5'
10517 3' -52.2 NC_002687.1 + 118167 0.66 0.99889
Target:  5'- aGC-UGCGGu-GCAgucgcagAGCCCGUAUGCg -3'
miRNA:   3'- gCGcACGCCuuUGU-------UCGGGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 22187 0.66 0.998691
Target:  5'- gCGUGUGCGcacGAAGCAugacgagccAGCCCcgGCGa- -3'
miRNA:   3'- -GCGCACGC---CUUUGU---------UCGGGuaUGUga -5'
10517 3' -52.2 NC_002687.1 + 260193 0.66 0.998667
Target:  5'- gGCGUGCGaaacguuggccgaGAGACAGGCUgCGaACGCg -3'
miRNA:   3'- gCGCACGC-------------CUUUGUUCGG-GUaUGUGa -5'
10517 3' -52.2 NC_002687.1 + 90025 0.66 0.998643
Target:  5'- uCGCGgccuccguugucGCGGGAGCAGGUgCCGUaagaucggGCACUg -3'
miRNA:   3'- -GCGCa-----------CGCCUUUGUUCG-GGUA--------UGUGA- -5'
10517 3' -52.2 NC_002687.1 + 316183 0.66 0.998435
Target:  5'- uCGgGUGCGGcgGCG-GCaCCcgGCGCg -3'
miRNA:   3'- -GCgCACGCCuuUGUuCG-GGuaUGUGa -5'
10517 3' -52.2 NC_002687.1 + 319115 0.66 0.998407
Target:  5'- cCGCGgaaaaucUGgGGAAACAccGCCCGUACuCg -3'
miRNA:   3'- -GCGC-------ACgCCUUUGUu-CGGGUAUGuGa -5'
10517 3' -52.2 NC_002687.1 + 310877 0.66 0.998262
Target:  5'- gCGCGUGCGGcgGCGauuauuggaaaagggGGCcCCGUGgAUg -3'
miRNA:   3'- -GCGCACGCCuuUGU---------------UCG-GGUAUgUGa -5'
10517 3' -52.2 NC_002687.1 + 104997 0.66 0.998138
Target:  5'- --gGUGCaGcAGAUAGGCCCGUGCAg- -3'
miRNA:   3'- gcgCACGcC-UUUGUUCGGGUAUGUga -5'
10517 3' -52.2 NC_002687.1 + 37895 0.67 0.997402
Target:  5'- aCGgGUGgGGAggUu-GCCgGUACGCa -3'
miRNA:   3'- -GCgCACgCCUuuGuuCGGgUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 295982 0.67 0.997402
Target:  5'- uGCGUGCGGuuGACGcGCaugaCGUGCAg- -3'
miRNA:   3'- gCGCACGCCu-UUGUuCGg---GUAUGUga -5'
10517 3' -52.2 NC_002687.1 + 85167 0.67 0.997402
Target:  5'- aGCGcaGCGGcacAACAAGCCCcuGUACAg- -3'
miRNA:   3'- gCGCa-CGCCu--UUGUUCGGG--UAUGUga -5'
10517 3' -52.2 NC_002687.1 + 118873 0.67 0.997402
Target:  5'- aGCGUgGCGaAGACGAGUacuauuucuacuCCAUACGCg -3'
miRNA:   3'- gCGCA-CGCcUUUGUUCG------------GGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 111082 0.67 0.997402
Target:  5'- uCGCGUGCaGGcAGACuuGCCUaccuuggucuGUGCACa -3'
miRNA:   3'- -GCGCACG-CC-UUUGuuCGGG----------UAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 118807 0.67 0.996951
Target:  5'- uCGC-UGCGGcguucuuuuGGGCAAGCUuaCAUGCACUc -3'
miRNA:   3'- -GCGcACGCC---------UUUGUUCGG--GUAUGUGA- -5'
10517 3' -52.2 NC_002687.1 + 307414 0.67 0.995855
Target:  5'- cCGCGUGCGcccAACAAGCCUgcugGgACUg -3'
miRNA:   3'- -GCGCACGCcu-UUGUUCGGGua--UgUGA- -5'
10517 3' -52.2 NC_002687.1 + 58816 0.67 0.995855
Target:  5'- gGCGUGUuuGAA--AAGCCCGUGCAUUu -3'
miRNA:   3'- gCGCACGc-CUUugUUCGGGUAUGUGA- -5'
10517 3' -52.2 NC_002687.1 + 259351 0.67 0.995196
Target:  5'- aCGCGUgGUGGAGAC-AGCCuCGUcaaaACAUa -3'
miRNA:   3'- -GCGCA-CGCCUUUGuUCGG-GUA----UGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.