miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10517 3' -52.2 NC_002687.1 + 234237 0.68 0.991664
Target:  5'- aGCGUGacc-AGCAGGCCCGUGC-CUu -3'
miRNA:   3'- gCGCACgccuUUGUUCGGGUAUGuGA- -5'
10517 3' -52.2 NC_002687.1 + 260193 0.66 0.998667
Target:  5'- gGCGUGCGaaacguuggccgaGAGACAGGCUgCGaACGCg -3'
miRNA:   3'- gCGCACGC-------------CUUUGUUCGG-GUaUGUGa -5'
10517 3' -52.2 NC_002687.1 + 118167 0.66 0.99889
Target:  5'- aGC-UGCGGu-GCAgucgcagAGCCCGUAUGCg -3'
miRNA:   3'- gCGcACGCCuuUGU-------UCGGGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 215694 0.66 0.99891
Target:  5'- aCGCGUGauaCGGggGCGccauaAGCCCc--CACg -3'
miRNA:   3'- -GCGCAC---GCCuuUGU-----UCGGGuauGUGa -5'
10517 3' -52.2 NC_002687.1 + 58816 0.67 0.995855
Target:  5'- gGCGUGUuuGAA--AAGCCCGUGCAUUu -3'
miRNA:   3'- gCGCACGc-CUUugUUCGGGUAUGUGA- -5'
10517 3' -52.2 NC_002687.1 + 170893 1.08 0.015568
Target:  5'- aCGCGUGCGGAAACAAGCCCAUACACUu -3'
miRNA:   3'- -GCGCACGCCUUUGUUCGGGUAUGUGA- -5'
10517 3' -52.2 NC_002687.1 + 281787 0.72 0.942328
Target:  5'- gCGCGUGUGGGAACGgcgggggcaggGGCCgGgGCGCc -3'
miRNA:   3'- -GCGCACGCCUUUGU-----------UCGGgUaUGUGa -5'
10517 3' -52.2 NC_002687.1 + 331817 0.7 0.971209
Target:  5'- aGUGUcGCGGAaacggagcucGACGAGUCCGcGCACg -3'
miRNA:   3'- gCGCA-CGCCU----------UUGUUCGGGUaUGUGa -5'
10517 3' -52.2 NC_002687.1 + 139781 0.69 0.984665
Target:  5'- gGUGUGCGGuggacaugcACAAGUCCAUcuGCAUa -3'
miRNA:   3'- gCGCACGCCuu-------UGUUCGGGUA--UGUGa -5'
10517 3' -52.2 NC_002687.1 + 111082 0.67 0.997402
Target:  5'- uCGCGUGCaGGcAGACuuGCCUaccuuggucuGUGCACa -3'
miRNA:   3'- -GCGCACG-CC-UUUGuuCGGG----------UAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 295982 0.67 0.997402
Target:  5'- uGCGUGCGGuuGACGcGCaugaCGUGCAg- -3'
miRNA:   3'- gCGCACGCCu-UUGUuCGg---GUAUGUga -5'
10517 3' -52.2 NC_002687.1 + 200922 0.68 0.993968
Target:  5'- uGCGggcGCGGAcucuaggggcggcuuGGCAcaguGGCUCAUGCGCg -3'
miRNA:   3'- gCGCa--CGCCU---------------UUGU----UCGGGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 310877 0.66 0.998262
Target:  5'- gCGCGUGCGGcgGCGauuauuggaaaagggGGCcCCGUGgAUg -3'
miRNA:   3'- -GCGCACGCCuuUGU---------------UCG-GGUAUgUGa -5'
10517 3' -52.2 NC_002687.1 + 34273 0.68 0.994455
Target:  5'- uGCG-GCGGAAG-AGGCCU-UGCACg -3'
miRNA:   3'- gCGCaCGCCUUUgUUCGGGuAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 118873 0.67 0.997402
Target:  5'- aGCGUgGCGaAGACGAGUacuauuucuacuCCAUACGCg -3'
miRNA:   3'- gCGCA-CGCcUUUGUUCG------------GGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 319115 0.66 0.998407
Target:  5'- cCGCGgaaaaucUGgGGAAACAccGCCCGUACuCg -3'
miRNA:   3'- -GCGC-------ACgCCUUUGUu-CGGGUAUGuGa -5'
10517 3' -52.2 NC_002687.1 + 63406 0.66 0.99891
Target:  5'- gGCGUGC-GAGAU---CCCAUACGCc -3'
miRNA:   3'- gCGCACGcCUUUGuucGGGUAUGUGa -5'
10517 3' -52.2 NC_002687.1 + 259351 0.67 0.995196
Target:  5'- aCGCGUgGUGGAGAC-AGCCuCGUcaaaACAUa -3'
miRNA:   3'- -GCGCA-CGCCUUUGuUCGG-GUA----UGUGa -5'
10517 3' -52.2 NC_002687.1 + 85167 0.67 0.997402
Target:  5'- aGCGcaGCGGcacAACAAGCCCcuGUACAg- -3'
miRNA:   3'- gCGCa-CGCCu--UUGUUCGGG--UAUGUga -5'
10517 3' -52.2 NC_002687.1 + 125310 0.68 0.99052
Target:  5'- uGCG-GCGGGAugGAGUCUGUAguCGCa -3'
miRNA:   3'- gCGCaCGCCUUugUUCGGGUAU--GUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.